Aniseed - Gene card

Gene Card

Best human hits

IDH3A; IDH3B; IDH3G

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007271

Gene Model ID

KH2012:KH.C5.392

Location

KhC5:1537456..1542164

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000004407
NCBI Reference Sequence	XM_002129463.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl052k02

Plate: R1CiGC14k13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
IsoCit/isopropylmalate_DH_CS	ProSitePatterns	Isocitrate/isopropylmalate dehydrogenase, conserved site
IsoPropMal-DH-like_dom	Pfam	Isopropylmalate dehydrogenase-like domain
IsoPropMal-DH-like_dom	SMART	Isopropylmalate dehydrogenase-like domain
Isocitrate_DH_NAD	TIGRFAM	Isocitrate dehydrogenase NAD-dependent

GOSlim

16 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
magnesium ion binding	Orthology	molecular function
ATP binding	Blast	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
myelin sheath	Blast	cellular component
metal ion binding	Blast	molecular function
oxidation-reduction process	Orthology	biological process
catalytic activity	Orthology	molecular function
cellular metabolic process	Orthology	biological process
organic substance metabolic process	Orthology	biological process
metabolic process	Orthology	biological process
coenzyme binding	Orthology	molecular function

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
magnesium ion binding	Hs	molecular function
isocitrate dehydrogenase (NAD+) activity	Hs	molecular function
nucleus	Hs	cellular component
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
tricarboxylic acid cycle	Hs	biological process
isocitrate metabolic process	Hs	biological process
2-oxoglutarate metabolic process	Hs	biological process
NADH metabolic process	Hs	biological process
electron carrier activity	Hs	molecular function
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Hs	molecular function
electron transport chain	Hs	biological process
NAD binding	Hs	molecular function
oxidation-reduction process	Hs	biological process

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	353	4.87e-120
magnesium ion binding	Hs	molecular function	466	8.20e-165
isocitrate dehydrogenase (NAD+) activity	Hs	molecular function	466	8.20e-165
ATP binding	Hs	molecular function	353	4.87e-120
nucleus	Hs	cellular component	466	8.20e-165
nucleoplasm	Hs	cellular component	353	4.87e-120
nucleolus	Hs	cellular component	353	4.87e-120
mitochondrion	Hs	cellular component	466	8.20e-165
mitochondrial matrix	Hs	cellular component	466	8.20e-165
electron carrier activity	Hs	molecular function	466	8.20e-165
oxidoreductase activity	Hs	molecular function	288	5.44e-95
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Hs	molecular function	466	8.20e-165
myelin sheath	Hs	cellular component	288	5.44e-95
metal ion binding	Hs	molecular function	353	4.87e-120
NAD binding	Hs	molecular function	466	8.20e-165

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
magnesium ion binding	ProSitePatterns	molecular function
isocitrate dehydrogenase (NAD+) activity	TIGRFAM	molecular function	4.1E-150
tricarboxylic acid cycle	TIGRFAM	biological process	4.1E-150
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	SMART	molecular function	1.7E-148
NAD binding	ProSitePatterns	molecular function
oxidation-reduction process	SMART	biological process	1.4E-99