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GENE CARD

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Gene Card

Best human hits

KLF15; KLF5; SP3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007314

Gene Model ID

KH2012:KH.C5.430

Location

KhC5:239145..242652

Transcript Models and Sequences

  KH2012:KH.C5.430.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000007493
NCBI Reference Sequence NM_001128906.1
Collections

Gateway full ORF

4 results

cima829014

Plate: VES61_F15

cien127712

Plate: VES90_E07

cien222151

Plate: VES104_P16

cien224943

Plate: VES105_D02

Gene collection 1 (N. Satoh)

2 results

cicl044g16

Plate: R1CiGC12p18

citb067h01

Plate: R1CiGC46k23

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Znf_C2H2_sf SUPERFAMILY Zinc finger C2H2 superfamily
Znf_C2H2_type ProSiteProfiles Zinc finger C2H2-type
Znf_C2H2_type ProSitePatterns Zinc finger C2H2-type
Znf_C2H2_type SMART Zinc finger C2H2-type

GOSlim

29 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
core promoter proximal region sequence-specific DNA binding Blast molecular function
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Blast molecular function
double-stranded DNA binding Blast molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
Golgi apparatus Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription factor binding Blast molecular function
regulation of gene expression Orthology biological process
intracellular membrane-bounded organelle Blast cellular component
sequence-specific DNA binding Blast molecular function
transcription regulatory region DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metal ion binding Orthology molecular function
neurogenesis Orthology biological process
animal organ development Orthology biological process
cell differentiation Orthology biological process
nuclear body Blast cellular component
macromolecular complex Blast cellular component

GO (Orthology)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
glial cell differentiation Hs biological process
regulation of gene expression Hs biological process
transcription regulatory region DNA binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
glomerular visceral epithelial cell differentiation Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 142 2.66e-35
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 149 7.15e-39
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 172 2.09e-47
core promoter proximal region sequence-specific DNA binding Hs molecular function 142 2.66e-35
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 172 2.09e-47
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 142 2.66e-35
nucleic acid binding Hs molecular function 172 2.09e-47
DNA binding Hs molecular function 172 2.09e-47
chromatin binding Hs molecular function 142 2.66e-35
double-stranded DNA binding Hs molecular function 142 2.66e-35
transcription factor activity, sequence-specific DNA binding Hs molecular function 172 2.09e-47
protein binding Hs molecular function 172 2.09e-47
nucleus Hs cellular component 172 2.09e-47
nucleoplasm Hs cellular component 149 7.15e-39
Golgi apparatus Hs cellular component 149 7.15e-39
transcription factor binding Hs molecular function 149 7.15e-39
PML body Hs cellular component 142 2.66e-35
transcriptional repressor complex Hs cellular component 142 2.66e-35
protein-DNA complex Hs cellular component 142 2.66e-35
intracellular membrane-bounded organelle Hs cellular component 149 7.15e-39
sequence-specific DNA binding Hs molecular function 149 7.15e-39
transcription regulatory region DNA binding Hs molecular function 172 2.09e-47
metal ion binding Hs molecular function 172 2.09e-47

GO (InterProScan)

1 result

GO Term Analysis Type e-value
nucleic acid binding SMART molecular function 6.7E-5

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