Aniseed - Gene card

Gene Card

Best human hits

MTREX; SKIV2L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007341

Gene Model ID

KH2012:KH.C5.455

Location

KhC5:3231893..3241409

Transcript Models and Sequences

KH2012:KH.C5.455.v1.A.ND1-1
KH2012:KH.C5.455.v1.A.nonSL2-1
KH2012:KH.C5.455.v1.A.nonSL3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003239
NCBI Reference Sequence	XM_002131133.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

4 results

citb073n08

Plate: R1CiGC46e12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

12 results

IPR Term	Analysis	Definition
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
Helicase_C	ProSiteProfiles	Helicase, C-terminal
Helicase_C	CDD	Helicase, C-terminal
Ski2_C	SMART	ATP-dependent RNA helicase Ski2, C-terminal
Ski2-like	PIRSF	ATP-dependent RNA helicase Ski2-like
Helicase_C	Pfam	Helicase, C-terminal
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain
Helicase_C	SMART	Helicase, C-terminal
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
rRNA_proc-arch_dom	Pfam	rRNA-processing arch domain
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
Ski2_C	Pfam	ATP-dependent RNA helicase Ski2, C-terminal

GOSlim

21 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
mRNA splicing, via spliceosome	Orthology	biological process
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
mRNA processing	Orthology	biological process
RNA catabolic process	Orthology	biological process
RNA splicing	Orthology	biological process
hydrolase activity	Orthology	molecular function
intracellular part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
RNA processing	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
nuclear part	Orthology	cellular component
cytoplasmic part	Blast	cellular component

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
exosome (RNase complex)	Hs	cellular component
mRNA splicing, via spliceosome	Hs	biological process
maturation of 5.8S rRNA	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
RNA helicase activity	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
nucleolus	Hs	cellular component
rRNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA catabolic process	Hs	biological process
RNA splicing	Hs	biological process
hydrolase activity	Hs	molecular function
catalytic step 2 spliceosome	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score
nucleotide binding	Hs	molecular function	1445
exosome (RNase complex)	Hs	cellular component	1445
nucleic acid binding	Hs	molecular function	1445
RNA binding	Hs	molecular function	1445
RNA helicase activity	Hs	molecular function	1445
ATP-dependent RNA helicase activity	Hs	molecular function	1445
helicase activity	Hs	molecular function	1445
protein binding	Hs	molecular function	1445
ATP binding	Hs	molecular function	1445
nucleus	Hs	cellular component	1445
nucleoplasm	Hs	cellular component	1445
spliceosomal complex	Hs	cellular component	1445
nucleolus	Hs	cellular component	1445
cytoplasm	Hs	cellular component	578
cytosol	Hs	cellular component	578
hydrolase activity	Hs	molecular function	1445
Ski complex	Hs	cellular component	578
catalytic step 2 spliceosome	Hs	cellular component	1445

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	1.7E-16
RNA binding	PIRSF	molecular function	0.0
RNA helicase activity	PIRSF	molecular function	0.0
ATP binding	Pfam	molecular function	1.7E-16
RNA catabolic process	PIRSF	biological process	0.0