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Gene Card

Best human hits

CNN1; CNN3; TAGLN

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007457

Gene Model ID

KH2012:KH.C5.56

Location

KhC5:208275..210799

Transcript Models and Sequences

  KH2012:KH.C5.56.v1.A.nonSL10-1
KH2012:KH.C5.56.v1.A.nonSL11-1
KH2012:KH.C5.56.v1.A.nonSL12-1
KH2012:KH.C5.56.v1.A.nonSL14-1
KH2012:KH.C5.56.v1.A.nonSL15-1
KH2012:KH.C5.56.v1.A.nonSL16-1
KH2012:KH.C5.56.v1.A.nonSL3-1
KH2012:KH.C5.56.v1.A.nonSL4-1
KH2012:KH.C5.56.v1.A.nonSL5-1
KH2012:KH.C5.56.v1.A.nonSL6-1
KH2012:KH.C5.56.v1.A.nonSL7-1
KH2012:KH.C5.56.v1.A.nonSL8-1
KH2012:KH.C5.56.v1.A.nonSL9-1
KH2012:KH.C5.56.v1.A.SL1-1
KH2012:KH.C5.56.v1.A.SL13-1
KH2012:KH.C5.56.v1.R.ND2-1
KH2012:KH.C5.56.v2.A.nonSL10-2
KH2012:KH.C5.56.v2.A.nonSL11-2
KH2012:KH.C5.56.v2.A.nonSL12-2
KH2012:KH.C5.56.v2.A.nonSL14-2
KH2012:KH.C5.56.v2.A.nonSL15-2
KH2012:KH.C5.56.v2.A.nonSL3-2
KH2012:KH.C5.56.v2.A.nonSL4-2
KH2012:KH.C5.56.v2.A.nonSL5-2
KH2012:KH.C5.56.v2.A.nonSL6-2
KH2012:KH.C5.56.v2.A.nonSL7-2
KH2012:KH.C5.56.v2.A.nonSL8-2
KH2012:KH.C5.56.v2.A.nonSL9-2
KH2012:KH.C5.56.v2.A.SL13-2
KH2012:KH.C5.56.v2.R.ND2-2
KH2012:KH.C5.56.v3.A.SL1-2

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000007496
Collections

Gateway full ORF

2 results

cima82507

Plate: VES56_P13

cima877575

Plate: VES68_B06

Gene collection 1 (N. Satoh)

1 result

cicl009j16

Plate: R1CiGC09o20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term Analysis Definition
CH_dom_sf SUPERFAMILY CH domain superfamily
CH_dom_sf Gene3D CH domain superfamily
CH-domain Pfam Calponin homology domain
CH-domain ProSiteProfiles Calponin homology domain
SM22_calponin PRINTS Smooth muscle protein/calponin
CH-domain CDD Calponin homology domain
CH-domain SMART Calponin homology domain

GOSlim

35 results

GO Term Annotation Origin Type
actin binding Orthology molecular function
protein binding Orthology molecular function
calmodulin binding Orthology molecular function
cytoplasm Blast cellular component
cytosol Orthology cellular component
cytoskeleton Orthology cellular component
focal adhesion Orthology cellular component
microtubule binding Orthology molecular function
neuronal cell body Orthology cellular component
actin filament binding Blast molecular function
extracellular region Orthology cellular component
positive regulation of gene expression Orthology biological process
membrane Orthology cellular component
wound healing Orthology biological process
regulation of cell proliferation Orthology biological process
extracellular exosome Orthology cellular component
adherens junction Orthology cellular component
organelle Orthology cellular component
postsynapse Orthology cellular component
neuron part Orthology cellular component
anatomical structure development Orthology biological process
cell differentiation Orthology biological process
organelle organization Orthology biological process
nucleoside-triphosphatase activity Orthology molecular function
cell adhesion Orthology biological process
cell adhesion molecule binding Orthology molecular function
cytoskeletal part Orthology cellular component
cell junction Orthology cellular component
animal organ development Orthology biological process
immune system process Orthology biological process
cell migration Orthology biological process
intracellular organelle part Orthology cellular component
cytoplasmic vesicle Orthology cellular component
endomembrane system Orthology cellular component
intracellular organelle lumen Orthology cellular component

GO (Orthology)

35 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
actin binding Hs molecular function
protein binding Hs molecular function
calmodulin binding Hs molecular function
cytosol Hs cellular component
cytoskeleton Hs cellular component
cell-cell adherens junction Hs cellular component
focal adhesion Hs cellular component
regulation of smooth muscle contraction Hs biological process
microtubule binding Hs molecular function
postsynaptic density Hs cellular component
actin cytoskeleton Hs cellular component
dendrite Hs cellular component
epithelial cell differentiation Hs biological process
actomyosin structure organization Hs biological process
negative regulation of ATPase activity Hs biological process
neuronal cell body Hs cellular component
dendritic spine Hs cellular component
cell-cell adhesion Hs biological process
cadherin binding involved in cell-cell adhesion Hs molecular function
stress fiber Hs cellular component
extracellular region Hs cellular component
cell-cell junction Hs cellular component
cytoskeleton organization Hs biological process
positive regulation of gene expression Hs biological process
membrane Hs cellular component
hemopoiesis Hs biological process
negative regulation of cell migration Hs biological process
regulation of actin filament-based process Hs biological process
specific granule lumen Hs cellular component
wound healing Hs biological process
regulation of cell proliferation Hs biological process
cadherin binding Hs molecular function
extracellular exosome Hs cellular component
cellular response to mechanical stimulus Hs biological process
tertiary granule lumen Hs cellular component

GO (Blast)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
actin binding Hs molecular function 107 9.74e-29
protein binding Hs molecular function 107 9.74e-29
calmodulin binding Hs molecular function 107 9.74e-29
cytoplasm Hs cellular component 93.2 1.26e-24
cytosol Hs cellular component 107 9.74e-29
cytoskeleton Hs cellular component 97.4 1.99e-25
cell-cell adherens junction Hs cellular component 107 9.74e-29
focal adhesion Hs cellular component 107 9.74e-29
microtubule binding Hs molecular function 107 9.74e-29
postsynaptic density Hs cellular component 107 9.74e-29
actin cytoskeleton Hs cellular component 107 9.74e-29
dendrite Hs cellular component 107 9.74e-29
neuronal cell body Hs cellular component 107 9.74e-29
dendritic spine Hs cellular component 107 9.74e-29
actin filament binding Hs molecular function 93.2 1.26e-24
cadherin binding involved in cell-cell adhesion Hs molecular function 107 9.74e-29

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding Pfam molecular function 1.5E-21

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