Aniseed - Gene card

Gene Card

Best human hits

LNX2; MPDZ; PATJ

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007468

Gene Model ID

KH2012:KH.C5.57

Location

KhC5:3700120..3728901

Transcript Models and Sequences

KH2012:KH.C5.57.v1.A.ND3-1
KH2012:KH.C5.57.v1.A.SL2-1
KH2012:KH.C5.57.v2.A.SL5-1
KH2012:KH.C5.57.v2.R.ND4-1
KH2012:KH.C5.57.v3.A.ND3-1
KH2012:KH.C5.57.v3.A.SL2-1
KH2012:KH.C5.57.v4.A.ND3-2
KH2012:KH.C5.57.v4.A.SL2-2
KH2012:KH.C5.57.v5.A.SL1-2
KH2012:KH.C5.57.v6.A.SL1-1
KH2012:KH.C5.57.v7.A.SL1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
NCBI Reference Sequence	XM_018811976.1
NCBI Reference Sequence	XM_018811977.1
NCBI Reference Sequence	XM_018811978.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

cilv038d04

Plate: R1CiGC28k05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
PDZ_sf	SUPERFAMILY	PDZ superfamily
PDZ	ProSiteProfiles	PDZ domain
PDZ	Pfam	PDZ domain
PDZ	SMART	PDZ domain
L27_2	Pfam	L27-2
L27_dom_sf	SUPERFAMILY	L27 domain superfamily

GOSlim

24 results

GO Term	Annotation Origin	Type
protein binding	Blast	molecular function
cytoplasm	Blast	cellular component
centrosome	Blast	cellular component
microtubule organizing center	Blast	cellular component
cytosol	Blast	cellular component
plasma membrane	Blast	cellular component
protein C-terminus binding	Blast	molecular function
membrane	Blast	cellular component
apical plasma membrane	Blast	cellular component
cell junction	Blast	cellular component
cytoplasmic vesicle	Blast	cellular component
cell projection	Blast	cellular component
neuron projection	Blast	cellular component
apical part of cell	Blast	cellular component
synapse	Blast	cellular component
postsynaptic membrane	Blast	cellular component
metal ion binding	Blast	molecular function
perinuclear region of cytoplasm	Blast	cellular component
extracellular exosome	Blast	cellular component
organelle	Blast	cellular component
postsynapse	Blast	cellular component
neuron part	Blast	cellular component
plasma membrane region	Blast	cellular component
myelin sheath	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
protein binding	Hs	molecular function	715	0.0
cytoplasm	Hs	cellular component	715	0.0
centrosome	Hs	cellular component	429	1.18e-122
microtubule organizing center	Hs	cellular component	429	1.18e-122
cytosol	Hs	cellular component	429	1.18e-122
plasma membrane	Hs	cellular component	715	0.0
bicellular tight junction	Hs	cellular component	715	0.0
protein C-terminus binding	Hs	molecular function	715	0.0
postsynaptic density	Hs	cellular component	715	0.0
membrane	Hs	cellular component	715	0.0
apical plasma membrane	Hs	cellular component	715	0.0
apicolateral plasma membrane	Hs	cellular component	715	0.0
cell junction	Hs	cellular component	715	0.0
PDZ domain binding	Hs	molecular function	229	3.68e-63
dendrite	Hs	cellular component	715	0.0
cytoplasmic vesicle	Hs	cellular component	715	0.0
cell projection	Hs	cellular component	715	0.0
neuron projection	Hs	cellular component	715	0.0
Schmidt-Lanterman incisure	Hs	cellular component	715	0.0
apical part of cell	Hs	cellular component	429	1.18e-122
synapse	Hs	cellular component	715	0.0
postsynaptic membrane	Hs	cellular component	715	0.0
metal ion binding	Hs	molecular function	229	3.68e-63
perinuclear region of cytoplasm	Hs	cellular component	429	1.18e-122
extracellular exosome	Hs	cellular component	429	1.18e-122

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	SUPERFAMILY	molecular function	2.5E-27