Gene Card
Best human hits
PABPC4; RBM19; RBM28
Unique Gene ID
Cirobu.g00007564
Gene Model ID
KH2012:KH.C5.656
Location
KhC5:4900599..4905247
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000009238 |
| NCBI Reference Sequence | XM_002130539.4 |
Gateway full ORF
3 results
Gene collection 1 (N. Satoh)
3 results
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RRM_dom | SMART | RNA recognition motif domain |
| RRM_dom_euk | SMART | RNA recognition motif domain, eukaryote |
| RRM_dom | Pfam | RNA recognition motif domain |
GOSlim
15 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Blast | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Blast | cellular component |
| nucleolus | Orthology | cellular component |
| cytoplasm | Blast | cellular component |
| cytosol | Blast | cellular component |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| membrane | Blast | cellular component |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| intracellular non-membrane-bounded organelle | Blast | cellular component |
| cytoplasmic part | Blast | cellular component |
GO (Orthology)
7 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| nucleolus | Hs | cellular component |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
GO (Blast)
16 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 370 | 1.27e-116 |
| RNA binding | Hs | molecular function | 370 | 1.27e-116 |
| mRNA binding | Hs | molecular function | 60.8 | 2.42e-09 |
| protein binding | Hs | molecular function | 60.8 | 2.42e-09 |
| nucleus | Hs | cellular component | 370 | 1.27e-116 |
| nucleoplasm | Hs | cellular component | 63.9 | 2.90e-10 |
| spliceosomal complex | Hs | cellular component | 370 | 1.27e-116 |
| chromosome | Hs | cellular component | 63.9 | 2.90e-10 |
| nucleolus | Hs | cellular component | 370 | 1.27e-116 |
| cytoplasm | Hs | cellular component | 63.9 | 2.90e-10 |
| cytosol | Hs | cellular component | 60.8 | 2.42e-09 |
| poly(A) binding | Hs | molecular function | 60.8 | 2.42e-09 |
| poly(U) RNA binding | Hs | molecular function | 60.8 | 2.42e-09 |
| cytoplasmic stress granule | Hs | cellular component | 60.8 | 2.42e-09 |
| membrane | Hs | cellular component | 63.9 | 2.90e-10 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 60.8 | 2.42e-09 |
GO (InterProScan)
1 result
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 2.58E-30 |
