Aniseed - Gene card

Gene Card

Best human hits

ARHGAP21; ARHGAP23

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007568

Gene Model ID

KH2012:KH.C5.66

Location

KhC5:1623325..1665331

Transcript Models and Sequences

KH2012:KH.C5.66.v1.A.SL1-1
KH2012:KH.C5.66.v1.A.SL8-1
KH2012:KH.C5.66.v2.A.SL2-2
KH2012:KH.C5.66.v3.A.nonSL10-2
KH2012:KH.C5.66.v3.A.nonSL6-2
KH2012:KH.C5.66.v3.A.nonSL7-2
KH2012:KH.C5.66.v3.R.ND4-2
KH2012:KH.C5.66.v4.A.SL2-1
KH2012:KH.C5.66.v5.A.nonSL10-1
KH2012:KH.C5.66.v5.A.nonSL6-1
KH2012:KH.C5.66.v5.A.nonSL7-1
KH2012:KH.C5.66.v5.R.ND4-1
KH2012:KH.C5.66.v6.A.ND5-1
KH2012:KH.C5.66.v7.A.ND3-2
KH2012:KH.C5.66.v8.A.SL9-2
KH2012:KH.C5.66.v9.A.SL9-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000023261
ENSEMBL	ENSCING00000023822
ENSEMBL	ENSCING00000023911
NCBI Reference Sequence	XM_018811952.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

3 results

cieg068a09

Plate: R1CiGC40g11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Rho_GTPase_activation_prot	SUPERFAMILY	Rho GTPase activation protein
Rho_GTPase_activation_prot	Gene3D	Rho GTPase activation protein
RhoGAP_dom	Pfam	Rho GTPase-activating protein domain
RhoGAP_dom	ProSiteProfiles	Rho GTPase-activating protein domain
RhoGAP_dom	SMART	Rho GTPase-activating protein domain
PH_domain	ProSiteProfiles	Pleckstrin homology domain
PH_domain	SMART	Pleckstrin homology domain
PH-like_dom_sf	Gene3D	PH-like domain superfamily

GOSlim

21 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
GTPase activator activity	Orthology	molecular function
protein binding	Orthology	molecular function
cytoplasm	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
plasma membrane	Orthology	cellular component
signal transduction	Orthology	biological process
membrane	Orthology	cellular component
cell junction	Orthology	cellular component
cytoplasmic vesicle	Orthology	cellular component
positive regulation of GTPase activity	Orthology	biological process
extracellular exosome	Orthology	cellular component
organelle organization	Orthology	biological process
intracellular organelle part	Orthology	cellular component
organelle membrane	Orthology	cellular component
small GTPase mediated signal transduction	Orthology	biological process
regulation of signal transduction	Orthology	biological process
microtubule-based movement	Orthology	biological process
intracellular transport	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
GTPase activator activity	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
Golgi apparatus	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
plasma membrane	Hs	cellular component
Golgi organization	Hs	biological process
signal transduction	Hs	biological process
actin cytoskeleton	Hs	cellular component
membrane	Hs	cellular component
cell junction	Hs	cellular component
cytoplasmic vesicle membrane	Hs	cellular component
cytoplasmic vesicle	Hs	cellular component
positive regulation of GTPase activity	Hs	biological process
regulation of small GTPase mediated signal transduction	Hs	biological process
establishment of Golgi localization	Hs	biological process
extracellular exosome	Hs	cellular component
organelle transport along microtubule	Hs	biological process

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	416	2.84e-118
GTPase activator activity	Hs	molecular function	416	2.84e-118
protein binding	Hs	molecular function	416	2.84e-118
cytoplasm	Hs	cellular component	416	2.84e-118
Golgi apparatus	Hs	cellular component	416	2.84e-118
cytosol	Hs	cellular component	416	2.84e-118
cytoskeleton	Hs	cellular component	416	2.84e-118
plasma membrane	Hs	cellular component	416	2.84e-118
actin cytoskeleton	Hs	cellular component	416	2.84e-118
membrane	Hs	cellular component	416	2.84e-118
cell junction	Hs	cellular component	416	2.84e-118
cytoplasmic vesicle membrane	Hs	cellular component	416	2.84e-118
cytoplasmic vesicle	Hs	cellular component	416	2.84e-118
extracellular exosome	Hs	cellular component	350	2.57e-98

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
signal transduction	Gene3D	biological process	3.7E-64