Aniseed - Gene card

Gene Card

Best human hits

LONRF1; LONRF2; LONRF3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007628

Gene Model ID

KH2012:KH.C6.112

Location

KhC6:1023649..1031116

Transcript Models and Sequences

KH2012:KH.C6.112.v1.A.SL1-1
KH2012:KH.C6.112.v1.A.SL2-1

External Database Gene Card

External database links

3 results

Database	Gene ID
NCBI Reference Sequence	XM_009860529.2
NCBI Reference Sequence	XM_009860530.2
NCBI Reference Sequence	XM_018812297.1

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

1 result

cieg010f23

Plate: R1CiGC17o03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

13 results

IPR Term	Analysis	Definition
TPR-contain_dom	ProSiteProfiles	Tetratricopeptide repeat-containing domain
Znf_RING_CS	ProSitePatterns	Zinc finger, RING-type, conserved site
TPR-like_helical_dom_sf	SUPERFAMILY	Tetratricopeptide-like helical domain superfamily
Lon_substr-bd	Pfam	Lon, substrate-binding domain
Znf_RING	ProSiteProfiles	Zinc finger, RING-type
Znf_RING	SMART	Zinc finger, RING-type
TPR-like_helical_dom_sf	Gene3D	Tetratricopeptide-like helical domain superfamily
TPR_repeat	ProSiteProfiles	Tetratricopeptide repeat
Lon_substr-bd	ProSiteProfiles	Lon, substrate-binding domain
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
PUA-like_sf	SUPERFAMILY	PUA-like superfamily
Lon_substr-bd	SMART	Lon, substrate-binding domain
TPR_repeat	SMART	Tetratricopeptide repeat

GOSlim

8 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
cytosol	Orthology	cellular component
metal ion binding	Orthology	molecular function
enzyme binding	Orthology	molecular function
proteolysis	Orthology	biological process

GO (Orthology)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein polyubiquitination	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
cytosol	Hs	cellular component
ubiquitin conjugating enzyme binding	Hs	molecular function
positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Hs	biological process
metal ion binding	Hs	molecular function
ubiquitin protein ligase activity	Hs	molecular function

GO (Blast)

7 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin-protein transferase activity	Hs	molecular function	311	1.57e-94
protein binding	Hs	molecular function	332	1.64e-102
intracellular	Hs	cellular component	332	1.64e-102
cytosol	Hs	cellular component	311	1.57e-94
ubiquitin conjugating enzyme binding	Hs	molecular function	332	1.64e-102
metal ion binding	Hs	molecular function	332	1.64e-102
ubiquitin protein ligase activity	Hs	molecular function	332	1.64e-102

GO (InterProScan)