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Gene Card

Best human hits

KDM2A; KDM2B; PHF8

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007642

Gene Model ID

KH2012:KH.C6.125

Location

KhC6:1750677..1755070

Transcript Models and Sequences

  KH2012:KH.C6.125.v1.A.nonSL10-1
KH2012:KH.C6.125.v1.A.nonSL3-1
KH2012:KH.C6.125.v1.A.nonSL4-1
KH2012:KH.C6.125.v1.A.nonSL6-1
KH2012:KH.C6.125.v1.A.nonSL7-1
KH2012:KH.C6.125.v1.A.nonSL8-1
KH2012:KH.C6.125.v1.A.nonSL9-1
KH2012:KH.C6.125.v1.A.SL5-1
KH2012:KH.C6.125.v1.R.ND1-1
KH2012:KH.C6.125.v2.A.SL2-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000002765
ENSEMBL ENSCING00000019168
NCBI Reference Sequence NM_001078430.1
NCBI Reference Sequence XM_018812173.1
Collections

Gateway full ORF

2 results

cien62573

Plate: VES80_A03

cien215421

Plate: VES103_N17

Gene collection 1 (N. Satoh)

2 results

cieg008a20

Plate: R1CiGC16p01

cieg083l02

Plate: R1CiGC40b01

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Znf_CXXC Pfam Zinc finger, CXXC-type
Leu-rich_rpt_Cys-con_subtyp SMART Leucine-rich repeat, cysteine-containing subtype
JmjC_dom ProSiteProfiles JmjC domain
JmjC_dom SMART JmjC domain
JmjC_dom Pfam JmjC domain
LRR_dom_sf Gene3D Leucine-rich repeat domain superfamily
F-box_dom Pfam F-box domain
Znf_CXXC ProSiteProfiles Zinc finger, CXXC-type
Leu-rich_rpt Pfam Leucine-rich repeat

GOSlim

20 results

GO Term Annotation Origin Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
DNA binding Blast molecular function
chromatin binding Blast molecular function
RNA binding Blast molecular function
iron ion binding Blast molecular function
protein binding Blast molecular function
nucleus Blast cellular component
nucleoplasm Blast cellular component
nucleolus Blast cellular component
zinc ion binding Blast molecular function
nuclear membrane Blast cellular component
metal ion binding Blast molecular function
oxidation-reduction process Blast biological process
transferase activity Blast molecular function
metabolic process Blast biological process
catalytic activity Blast molecular function
nuclear part Blast cellular component
macromolecular complex Blast cellular component
organelle organization Blast biological process
cellular protein modification process Blast biological process

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

24 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 420 3.83e-129
DNA binding Hs molecular function 449 2.06e-141
chromatin binding Hs molecular function 275 2.61e-78
RNA binding Hs molecular function 420 3.83e-129
iron ion binding Hs molecular function 275 2.61e-78
protein binding Hs molecular function 449 2.06e-141
nucleus Hs cellular component 449 2.06e-141
nucleoplasm Hs cellular component 449 2.06e-141
nucleolus Hs cellular component 420 3.83e-129
methyltransferase activity Hs molecular function 449 2.06e-141
zinc ion binding Hs molecular function 449 2.06e-141
oxidoreductase activity Hs molecular function 449 2.06e-141
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Hs molecular function 275 2.61e-78
rRNA binding Hs molecular function 420 3.83e-129
PcG protein complex Hs cellular component 420 3.83e-129
nuclear membrane Hs cellular component 275 2.61e-78
histone demethylase activity Hs molecular function 449 2.06e-141
histone demethylase activity (H3-K9 specific) Hs molecular function 275 2.61e-78
methylated histone binding Hs molecular function 275 2.61e-78
histone demethylase activity (H4-K20 specific) Hs molecular function 275 2.61e-78
metal ion binding Hs molecular function 449 2.06e-141
dioxygenase activity Hs molecular function 449 2.06e-141
histone demethylase activity (H3-K36 specific) Hs molecular function 449 2.06e-141
histone demethylase activity (H3-K27 specific) Hs molecular function 275 2.61e-78

GO (InterProScan)

3 results

GO Term Analysis Type e-value
DNA binding Pfam molecular function 3.6E-13
protein binding Pfam molecular function 4.1E-9
zinc ion binding Pfam molecular function 3.6E-13

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