Aniseed - Gene card

Gene Card

Best human hits

MRM3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007658

Gene Model ID

KH2012:KH.C6.14

Location

KhC6:1529839..1533633

Transcript Models and Sequences

KH2012:KH.C6.14.v1.A.SL1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000019042
NCBI Reference Sequence	XM_002120773.3
NCBI Reference Sequence	XM_009860541.2
NCBI Reference Sequence	XM_018812220.1

Collections

Gateway full ORF

5 results

Gene collection 1 (N. Satoh)

2 results

cicl060f03

Plate: R1CiGC15o05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
L30e-like	Gene3D	50S ribosomal protein L30e-like
Alpha/beta_knot_MTases	SUPERFAMILY	Alpha/beta knot methyltransferases
SpoU_MeTrfase	Pfam	tRNA/rRNA methyltransferase, SpoU type
L30e-like	SUPERFAMILY	50S ribosomal protein L30e-like

GOSlim

8 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
mitochondrion	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
RNA processing	Orthology	biological process
transferase activity	Orthology	molecular function
RNA metabolic process	Orthology	biological process
metabolic process	Orthology	biological process

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA methylation	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial matrix	Hs	cellular component
rRNA processing	Hs	biological process
RNA processing	Hs	biological process
methyltransferase activity	Hs	molecular function
RNA methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
methylation	Hs	biological process
rRNA (guanosine-2'-O-)-methyltransferase activity	Hs	molecular function

GO (Blast)

8 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	140	2.15e-37
protein binding	Hs	molecular function	140	2.15e-37
mitochondrion	Hs	cellular component	140	2.15e-37
mitochondrial matrix	Hs	cellular component	140	2.15e-37
methyltransferase activity	Hs	molecular function	140	2.15e-37
RNA methyltransferase activity	Hs	molecular function	140	2.15e-37
transferase activity	Hs	molecular function	140	2.15e-37
rRNA (guanosine-2'-O-)-methyltransferase activity	Hs	molecular function	140	2.15e-37

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
RNA binding	Pfam	molecular function	6.3E-6
RNA processing	Pfam	biological process	6.3E-6
RNA methyltransferase activity	Pfam	molecular function	6.3E-6