Aniseed - Gene card

Gene Card

Best human hits

RPL24; RSL24D1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007678

Gene Model ID

KH2012:KH.C6.158

Location

KhC6:1913828..1915656

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000018871
NCBI Reference Sequence	XM_004226109.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

3 results

ciad080c11

Plate: R1CiGC07n04

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Ribosomal_L24e-rel	PANTHER	Ribosomal protein L24e-related
Ribosomal_L24e-rel	Pfam	Ribosomal protein L24e-related
L24e/L24_sf	Gene3D	Ribosomal protein L24e/L24 superfamily
Ribosomal_L24e-rel	CDD	Ribosomal protein L24e-related
Ribosomal_L24e_CS	ProSitePatterns	Ribosomal protein L24e, conserved site

GOSlim

18 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
cell adhesion molecule binding	Orthology	molecular function

GO (Orthology)

21 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal large subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
membrane	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
polysomal ribosome	Hs	cellular component
cadherin binding	Hs	molecular function
extracellular exosome	Hs	cellular component
assembly of large subunit precursor of preribosome	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	140	7.73e-44
structural constituent of ribosome	Hs	molecular function	140	7.73e-44
protein binding	Hs	molecular function	140	7.73e-44
intracellular	Hs	cellular component	55.8	7.23e-11
nucleus	Hs	cellular component	55.8	7.23e-11
nucleolus	Hs	cellular component	55.8	7.23e-11
cytoplasm	Hs	cellular component	140	7.73e-44
endoplasmic reticulum	Hs	cellular component	140	7.73e-44
cytosol	Hs	cellular component	140	7.73e-44
ribosome	Hs	cellular component	140	7.73e-44
membrane	Hs	cellular component	140	7.73e-44
cytosolic large ribosomal subunit	Hs	cellular component	140	7.73e-44
intracellular ribonucleoprotein complex	Hs	cellular component	140	7.73e-44
polysomal ribosome	Hs	cellular component	140	7.73e-44
cadherin binding	Hs	molecular function	140	7.73e-44
extracellular exosome	Hs	cellular component	140	7.73e-44

GO (InterProScan)