Gene Card
Best human hits
SDE2; SF3A3
Unique Gene ID
Cirobu.g00007713
Gene Model ID
KH2012:KH.C6.190
Location
KhC6:1695345..1701563
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000002730 |
| NCBI Reference Sequence | XM_002131099.3 |
Gene collection 1 (N. Satoh)
2 results
cieg002k02
Plate: R1CiGC15b08
cicl010d17
Plate: R1CiGC09f21
n/a
You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see how you can interact with this tree
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
5 results
| IPR Term | Analysis | Definition |
|---|---|---|
| SF3A3 | PANTHER | Splicing factor 3A subunit 3 |
| SF3A3_dom | Pfam | SF3A3 domain |
| Matrin/U1-C_Znf_C2H2 | ProSiteProfiles | Matrin/U1-C, C2H2-type zinc finger |
| SF3a60_bindingd | Pfam | Splicing factor SF3a60 binding domain |
| DUF3449 | Pfam | Domain of unknown function DUF3449 |
GOSlim
15 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| RNA splicing, via transesterification reactions | Orthology | biological process |
| mRNA splicing, via spliceosome | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| DNA binding | Blast | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| mRNA processing | Orthology | biological process |
| zinc ion binding | Orthology | molecular function |
| RNA splicing | Orthology | biological process |
| nuclear speck | Orthology | cellular component |
| metal ion binding | Orthology | molecular function |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
GO (Orthology)
15 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| RNA splicing, via transesterification reactions | Hs | biological process |
| mRNA 3'-splice site recognition | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| mRNA processing | Hs | biological process |
| zinc ion binding | Hs | molecular function |
| RNA splicing | Hs | biological process |
| nuclear speck | Hs | cellular component |
| metal ion binding | Hs | molecular function |
| catalytic step 2 spliceosome | Hs | cellular component |
GO (Blast)
11 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 682 | 0.0 |
| DNA binding | Hs | molecular function | 57.8 | 7.41e-09 |
| RNA binding | Hs | molecular function | 682 | 0.0 |
| protein binding | Hs | molecular function | 682 | 0.0 |
| nucleus | Hs | cellular component | 682 | 0.0 |
| nucleoplasm | Hs | cellular component | 682 | 0.0 |
| spliceosomal complex | Hs | cellular component | 682 | 0.0 |
| zinc ion binding | Hs | molecular function | 682 | 0.0 |
| nuclear speck | Hs | cellular component | 682 | 0.0 |
| metal ion binding | Hs | molecular function | 682 | 0.0 |
| catalytic step 2 spliceosome | Hs | cellular component | 682 | 0.0 |
GO (InterProScan)
6 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| mRNA splicing, via spliceosome | PANTHER | biological process | 1.1E-184 |
| nucleic acid binding | ProSiteProfiles | molecular function | 9.048 |
| RNA binding | PANTHER | molecular function | 1.1E-184 |
| nucleus | ProSiteProfiles | cellular component | 9.048 |
| spliceosomal complex | PANTHER | cellular component | 1.1E-184 |
| zinc ion binding | ProSiteProfiles | molecular function | 9.048 |
