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GENE CARD

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Gene Card

Best human hits

LSM10; SNRPD1; SNRPD3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007723

Gene Model ID

KH2012:KH.C6.20

Location

KhC6:1079025..1080822

Transcript Models and Sequences

  KH2012:KH.C6.20.v1.A.ND1-1
KH2012:KH.C6.20.v1.A.nonSL2-1
KH2012:KH.C6.20.v1.A.nonSL3-1
KH2012:KH.C6.20.v1.A.nonSL4-1
KH2012:KH.C6.20.v1.A.nonSL5-1
KH2012:KH.C6.20.v2.A.ND1-1
KH2012:KH.C6.20.v2.A.nonSL2-1
KH2012:KH.C6.20.v2.A.nonSL3-1
KH2012:KH.C6.20.v2.A.nonSL4-1
KH2012:KH.C6.20.v2.A.nonSL5-1
KH2012:KH.C6.20.v3.A.SL6-1
KH2012:KH.C6.20.v4.A.SL6-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000024100
NCBI Reference Sequence XM_009860532.1
Collections

Gateway full ORF

2 results

cien72282

Plate: VES81_G16

cima812725

Plate: VES58_L10

Gene collection 1 (N. Satoh)

2 results

ciad005e09

Plate: R1CiGC01o02

citb077k10

Plate: R1CiGC46k10

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term Analysis Definition
Sm_D1 CDD Small nuclear ribonucleoprotein D1
LSM_dom_euk/arc Pfam LSM domain, eukaryotic/archaea-type
LSM_dom_sf SUPERFAMILY LSM domain superfamily
LSm4/Sm_D1/D3 PANTHER Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
LSM_dom_euk/arc SMART LSM domain, eukaryotic/archaea-type

GOSlim

18 results

GO Term Annotation Origin Type
mRNA splicing, via spliceosome Orthology biological process
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
RNA processing Orthology biological process
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear body Blast cellular component
enzyme binding Blast molecular function
extracellular exosome Blast cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component
cytoplasmic part Orthology cellular component
intracellular transport Orthology biological process
macromolecular complex binding Orthology molecular function

GO (Orthology)

31 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
commitment complex Hs cellular component
spliceosomal complex assembly Hs biological process
spliceosomal snRNP assembly Hs biological process
mRNA splicing, via spliceosome Hs biological process
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
spliceosomal complex Hs cellular component
U5 snRNP Hs cellular component
U1 snRNP Hs cellular component
U2 snRNP Hs cellular component
U4 snRNP Hs cellular component
U12-type spliceosomal complex Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
RNA processing Hs biological process
mRNA processing Hs biological process
RNA splicing Hs biological process
intracellular ribonucleoprotein complex Hs cellular component
small nuclear ribonucleoprotein complex Hs cellular component
methylosome Hs cellular component
pICln-Sm protein complex Hs cellular component
SMN-Sm protein complex Hs cellular component
nuclear import Hs biological process
U2-type catalytic step 2 spliceosome Hs cellular component
prespliceosome Hs cellular component
precatalytic spliceosome Hs cellular component
catalytic step 2 spliceosome Hs cellular component
spliceosomal tri-snRNP complex Hs cellular component
U1 snRNP binding Hs molecular function

GO (Blast)

34 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
commitment complex Hs cellular component 158 1.52e-51
RNA binding Hs molecular function 158 1.52e-51
protein binding Hs molecular function 158 1.52e-51
nucleus Hs cellular component 158 1.52e-51
nucleoplasm Hs cellular component 158 1.52e-51
spliceosomal complex Hs cellular component 158 1.52e-51
U5 snRNP Hs cellular component 158 1.52e-51
U7 snRNP Hs cellular component 45.4 3.23e-07
U1 snRNP Hs cellular component 158 1.52e-51
U2 snRNP Hs cellular component 158 1.52e-51
U4 snRNP Hs cellular component 158 1.52e-51
U12-type spliceosomal complex Hs cellular component 158 1.52e-51
telomerase holoenzyme complex Hs cellular component 43.1 2.60e-06
cytoplasm Hs cellular component 158 1.52e-51
cytosol Hs cellular component 158 1.52e-51
Cajal body Hs cellular component 45.4 3.23e-07
nuclear body Hs cellular component 45.4 3.23e-07
enzyme binding Hs molecular function 43.1 2.60e-06
intracellular ribonucleoprotein complex Hs cellular component 158 1.52e-51
small nuclear ribonucleoprotein complex Hs cellular component 158 1.52e-51
U2 snRNA binding Hs molecular function 43.1 2.60e-06
methylosome Hs cellular component 158 1.52e-51
pICln-Sm protein complex Hs cellular component 158 1.52e-51
SMN-Sm protein complex Hs cellular component 158 1.52e-51
telomerase RNA binding Hs molecular function 43.1 2.60e-06
extracellular exosome Hs cellular component 43.1 2.60e-06
U2-type catalytic step 2 spliceosome Hs cellular component 158 1.52e-51
prespliceosome Hs cellular component 158 1.52e-51
precatalytic spliceosome Hs cellular component 158 1.52e-51
catalytic step 2 spliceosome Hs cellular component 158 1.52e-51
histone pre-mRNA DCP binding Hs molecular function 45.4 3.23e-07
U7 snRNA binding Hs molecular function 45.4 3.23e-07
spliceosomal tri-snRNP complex Hs cellular component 158 1.52e-51
U1 snRNP binding Hs molecular function 158 1.52e-51

GO (InterProScan)

2 results

GO Term Analysis Type e-value
spliceosomal snRNP assembly CDD biological process 2.37494E-63
RNA processing PANTHER biological process 1.9E-49

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