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Gene Card

Best human hits

NONO; PSPC1; SFPQ

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007821

Gene Model ID

KH2012:KH.C6.29

Location

KhC6:1533633..1551600

Transcript Models and Sequences

  KH2012:KH.C6.29.v1.A.SL1-1
KH2012:KH.C6.29.v2.A.SL1-2

External Database Gene Card

External database links

5 results

Database Gene ID
ENSEMBL ENSCING00000004050
NCBI Reference Sequence XM_018812208.1
NCBI Reference Sequence XM_018812209.1
NCBI Reference Sequence XM_018812210.1
NCBI Reference Sequence XR_001974765.1
Collections

Gateway full ORF

4 results

cien51458

Plate: VES78_A08

cien76199

Plate: VES82_D09

cien94901

Plate: VES85_G06

cien132694

Plate: VES91_G02

Gene collection 1 (N. Satoh)

4 results

cieg004j10

Plate: R1CiGC16g13

cieg042k11

Plate: R1CiGC22g24

cieg055f22

Plate: R1CiGC24k04

cicl031b08

Plate: R1CiGC12e06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
Pept_M54_archaemetzincn Pfam Peptidase M54, archaemetzincin
RRM_dom Pfam RNA recognition motif domain
Nucleotide-bd_a/b_plait_sf Gene3D Nucleotide-binding alpha-beta plait domain superfamily
Pept_M54_archaemetzincn CDD Peptidase M54, archaemetzincin
MetalloPept_cat_dom_sf Gene3D Metallopeptidase, catalytic domain superfamily
RBD_domain_sf SUPERFAMILY RNA-binding domain superfamily
RRM_dom ProSiteProfiles RNA recognition motif domain
NOPS Pfam NOPS
RRM_dom SMART RNA recognition motif domain

GOSlim

41 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
mRNA splicing, via spliceosome Orthology biological process
transcription regulatory region sequence-specific DNA binding Orthology molecular function
immune system process Orthology biological process
nucleic acid binding Orthology molecular function
DNA binding Orthology molecular function
chromatin binding Orthology molecular function
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
nucleolus Orthology cellular component
cytoplasm Orthology cellular component
DNA repair Orthology biological process
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
mRNA processing Orthology biological process
cellular response to DNA damage stimulus Orthology biological process
RNA splicing Orthology biological process
membrane Orthology cellular component
nuclear speck Orthology cellular component
identical protein binding Orthology molecular function
protein homodimerization activity Orthology molecular function
transcription regulatory region DNA binding Orthology molecular function
innate immune response Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
metallopeptidase activity InterProScan molecular function
zinc ion binding InterProScan molecular function
intracellular organelle part Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
DNA metabolic process Orthology biological process
nuclear lumen Orthology cellular component
nuclear body Orthology cellular component
enzyme binding Orthology molecular function
organelle organization Orthology biological process
cell cycle Orthology biological process
cellular protein modification process Orthology biological process
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component

GO (Orthology)

46 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
alternative mRNA splicing, via spliceosome Hs biological process
mRNA splicing, via spliceosome Hs biological process
double-strand break repair via homologous recombination Hs biological process
chromatin Hs cellular component
transcription regulatory region sequence-specific DNA binding Hs molecular function
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function
core promoter binding Hs molecular function
fibrillar center Hs cellular component
activation of innate immune response Hs biological process
immune system process Hs biological process
nucleic acid binding Hs molecular function
DNA binding Hs molecular function
chromatin binding Hs molecular function
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
nucleolus Hs cellular component
cytoplasm Hs cellular component
DNA repair Hs biological process
DNA recombination Hs biological process
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
mRNA processing Hs biological process
cellular response to DNA damage stimulus Hs biological process
circadian rhythm Hs biological process
RNA splicing Hs biological process
membrane Hs cellular component
nuclear matrix Hs cellular component
nuclear speck Hs cellular component
paraspeckles Hs cellular component
regulation of circadian rhythm Hs biological process
negative regulation of circadian rhythm Hs biological process
identical protein binding Hs molecular function
protein homodimerization activity Hs molecular function
histone deacetylase binding Hs molecular function
transcription regulatory region DNA binding Hs molecular function
innate immune response Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
rhythmic process Hs biological process
chromosome organization Hs biological process
regulation of cell cycle Hs biological process
histone H3 deacetylation Hs biological process
RNA polymerase II transcription factor complex Hs cellular component

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
chromatin Hs cellular component 344 4.42e-107
transcription regulatory region sequence-specific DNA binding Hs molecular function 344 4.42e-107
RNA polymerase II distal enhancer sequence-specific DNA binding Hs molecular function 344 4.42e-107
core promoter binding Hs molecular function 344 4.42e-107
fibrillar center Hs cellular component 336 4.39e-106
nucleic acid binding Hs molecular function 344 4.42e-107
DNA binding Hs molecular function 344 4.42e-107
chromatin binding Hs molecular function 344 4.42e-107
RNA binding Hs molecular function 344 4.42e-107
protein binding Hs molecular function 344 4.42e-107
nucleus Hs cellular component 344 4.42e-107
nucleoplasm Hs cellular component 344 4.42e-107
nucleolus Hs cellular component 336 4.39e-106
cytoplasm Hs cellular component 344 4.42e-107
membrane Hs cellular component 328 8.48e-104
nuclear matrix Hs cellular component 344 4.42e-107
nuclear speck Hs cellular component 344 4.42e-107
paraspeckles Hs cellular component 344 4.42e-107
identical protein binding Hs molecular function 328 8.48e-104
protein homodimerization activity Hs molecular function 344 4.42e-107
histone deacetylase binding Hs molecular function 344 4.42e-107
transcription regulatory region DNA binding Hs molecular function 344 4.42e-107
RNA polymerase II transcription factor complex Hs cellular component 344 4.42e-107

GO (InterProScan)

3 results

GO Term Analysis Type e-value
nucleic acid binding SUPERFAMILY molecular function 8.83E-32
metallopeptidase activity Gene3D molecular function 4.1E-37
zinc ion binding CDD molecular function 1.81974E-36

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