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Gene Card

Best human hits

ID1; ID2; ID3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007979

Gene Model ID

KH2012:KH.C7.157

Location

KhC7:5779302..5779937

Transcript Models and Sequences

  KH2012:KH.C7.157.v1.A.nonSL1-1
KH2012:KH.C7.157.v1.A.nonSL2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000019712
NCBI Reference Sequence XM_002120684.3
Collections

Gateway full ORF

2 results

cien87514

Plate: VES84_B01

cien203351

Plate: VES101_K21

Gene collection 1 (N. Satoh)

2 results

cicl010f24

Plate: R1CiGC09h11

cicl025a03

Plate: R1CiGC11d15

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
DNA-bd_prot-inh PANTHER DNA-binding protein inhibitor
HLH_DNA-bd_sf Gene3D Helix-loop-helix DNA-binding domain superfamily
HLH_DNA-bd_sf SUPERFAMILY Helix-loop-helix DNA-binding domain superfamily

GOSlim

70 results

GO Term Annotation Origin Type
negative regulation of transcription from RNA polymerase II promoter Orthology biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
angiogenesis Orthology biological process
transcription factor activity, sequence-specific DNA binding Orthology molecular function
transcription corepressor activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
cytoplasm Orthology cellular component
Golgi apparatus Orthology cellular component
centrosome Orthology cellular component
cytosol Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
multicellular organism development Orthology biological process
brain development Orthology biological process
heart development Orthology biological process
protein C-terminus binding Orthology molecular function
transcription factor binding Orthology molecular function
positive regulation of gene expression Orthology biological process
negative regulation of gene expression Orthology biological process
neuron differentiation Orthology biological process
macromolecular complex Orthology cellular component
protein homodimerization activity Orthology molecular function
negative regulation of apoptotic process Orthology biological process
negative regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription, DNA-templated Orthology biological process
protein dimerization activity Orthology molecular function
protein N-terminus binding Orthology molecular function
cell development Orthology biological process
blood vessel morphogenesis Orthology biological process
cell morphogenesis involved in neuron differentiation Orthology biological process
central nervous system development Orthology biological process
response to wounding Orthology biological process
positive regulation of apoptotic process Orthology biological process
immune system process Orthology biological process
animal organ development Orthology biological process
cell differentiation Orthology biological process
cell surface receptor signaling pathway Orthology biological process
cellular response to organic substance Orthology biological process
neurogenesis Orthology biological process
response to organic substance Orthology biological process
organic substance metabolic process Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
regulation of molecular function Orthology biological process
organelle organization Orthology biological process
regulation of gene expression Orthology biological process
metabolic process Orthology biological process
DNA binding Orthology molecular function
intracellular signal transduction Orthology biological process
regulation of signal transduction Orthology biological process
regulation of cellular metabolic process Orthology biological process
protein phosphorylation Orthology biological process
cell migration Orthology biological process
anatomical structure morphogenesis Orthology biological process
positive regulation of cell proliferation Orthology biological process
neuron projection morphogenesis Orthology biological process
system development Orthology biological process
macromolecular complex binding Orthology molecular function
cellular response to stress Orthology biological process
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
G1/S transition of mitotic cell cycle Orthology biological process
negative regulation of cell proliferation Orthology biological process
DNA replication Orthology biological process
anatomical structure development Orthology biological process
cell cycle Orthology biological process
small molecule binding Orthology molecular function
anion binding Orthology molecular function
heterocyclic compound binding Orthology molecular function
organic cyclic compound binding Orthology molecular function

GO (Orthology)

92 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
negative regulation of transcription from RNA polymerase II promoter Hs biological process
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
angiogenesis Hs biological process
natural killer cell differentiation Hs biological process
thigmotaxis Hs biological process
leukocyte differentiation Hs biological process
transcription factor activity, sequence-specific DNA binding Hs molecular function
transcription corepressor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
cytoplasm Hs cellular component
Golgi apparatus Hs cellular component
centrosome Hs cellular component
cytosol Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transforming growth factor beta receptor signaling pathway Hs biological process
multicellular organism development Hs biological process
brain development Hs biological process
heart development Hs biological process
muscle organ development Hs biological process
circadian rhythm Hs biological process
protein C-terminus binding Hs molecular function
transcription factor binding Hs molecular function
adult locomotory behavior Hs biological process
entrainment of circadian clock Hs biological process
positive regulation of gene expression Hs biological process
negative regulation of gene expression Hs biological process
oligodendrocyte development Hs biological process
response to organic cyclic compound Hs biological process
regulation of lipid metabolic process Hs biological process
olfactory bulb development Hs biological process
neuron differentiation Hs biological process
BMP signaling pathway Hs biological process
protein destabilization Hs biological process
negative regulation of protein binding Hs biological process
positive regulation of actin filament bundle assembly Hs biological process
circadian regulation of gene expression Hs biological process
collagen metabolic process Hs biological process
macromolecular complex Hs cellular component
regulation of circadian rhythm Hs biological process
protein homodimerization activity Hs molecular function
negative regulation of apoptotic process Hs biological process
entrainment of circadian clock by photoperiod Hs biological process
negative regulation of DNA binding Hs biological process
regulation of MAPK cascade Hs biological process
negative regulation of sequence-specific DNA binding transcription factor activity Hs biological process
blood vessel endothelial cell migration Hs biological process
protein self-association Hs molecular function
ion channel binding Hs molecular function
locomotor rhythm Hs biological process
positive regulation of fat cell differentiation Hs biological process
positive regulation of erythrocyte differentiation Hs biological process
negative regulation of neuron differentiation Hs biological process
negative regulation of osteoblast differentiation Hs biological process
regulation of angiogenesis Hs biological process
positive regulation of blood pressure Hs biological process
negative regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
response to antibiotic Hs biological process
protein dimerization activity Hs molecular function
protein N-terminus binding Hs molecular function
cell development Hs biological process
rhythmic process Hs biological process
blood vessel morphogenesis Hs biological process
embryonic digestive tract morphogenesis Hs biological process
neuron fate commitment Hs biological process
cell morphogenesis involved in neuron differentiation Hs biological process
positive regulation of epithelial cell proliferation Hs biological process
negative regulation of dendrite morphogenesis Hs biological process
adipose tissue development Hs biological process
endodermal digestive tract morphogenesis Hs biological process
proteasome binding Hs molecular function
positive regulation of cell cycle arrest Hs biological process
cellular response to epidermal growth factor stimulus Hs biological process
cellular response to transforming growth factor beta stimulus Hs biological process
cellular senescence Hs biological process
negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding Hs biological process
cellular response to dopamine Hs biological process
regulation of G1/S transition of mitotic cell cycle Hs biological process
negative regulation of neural precursor cell proliferation Hs biological process
regulation of DNA replication Hs biological process
central nervous system development Hs biological process
response to wounding Hs biological process
protein domain specific binding Hs molecular function
epithelial cell differentiation Hs biological process
notochord development Hs biological process
odontogenesis Hs biological process
positive regulation of apoptotic process Hs biological process
regulation of cell cycle Hs biological process
leptomycin B binding Hs molecular function

GO (Blast)

19 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 41.2 9.70e-06
transcription factor activity, sequence-specific DNA binding Hs molecular function 34.7 0.003
transcription corepressor activity Hs molecular function 33.1 0.007
protein binding Hs molecular function 41.2 9.70e-06
nucleus Hs cellular component 41.2 9.70e-06
nucleoplasm Hs cellular component 34.7 0.003
cytoplasm Hs cellular component 41.2 9.70e-06
Golgi apparatus Hs cellular component 34.7 0.003
centrosome Hs cellular component 34.7 0.003
cytosol Hs cellular component 41.2 9.70e-06
protein C-terminus binding Hs molecular function 34.7 0.003
transcription factor binding Hs molecular function 34.7 0.003
macromolecular complex Hs cellular component 41.2 9.70e-06
protein homodimerization activity Hs molecular function 34.7 0.003
protein self-association Hs molecular function 34.7 0.003
ion channel binding Hs molecular function 41.2 9.70e-06
protein dimerization activity Hs molecular function 41.2 9.70e-06
protein N-terminus binding Hs molecular function 34.7 0.003
proteasome binding Hs molecular function 34.7 0.003

GO (InterProScan)

4 results

GO Term Analysis Type e-value
nucleus PANTHER cellular component 4.7E-21
cytoplasm PANTHER cellular component 4.7E-21
negative regulation of transcription, DNA-templated PANTHER biological process 4.7E-21
protein dimerization activity Gene3D molecular function 3.8E-8

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