Aniseed - Gene card

Gene Card

Best human hits

LSM7; LSM8; SNRPG

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00007981

Gene Model ID

KH2012:KH.C7.159

Location

KhC7:947786..949660

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000022134
NCBI Reference Sequence	XM_002127792.4
NCBI Reference Sequence	XR_001974813.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad079k18

Plate: R1CiGC07j12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
LSM_dom_euk/arc	Pfam	LSM domain, eukaryotic/archaea-type
Lsm7	CDD	Sm-like protein Lsm7
LSM_dom_euk/arc	SMART	LSM domain, eukaryotic/archaea-type
LSM_dom_sf	SUPERFAMILY	LSM domain superfamily

GOSlim

15 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
nuclear-transcribed mRNA catabolic process	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Blast	cellular component
cytosol	Orthology	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
cytoplasmic part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
nuclear-transcribed mRNA catabolic process	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U6 snRNP	Hs	cellular component
U12-type spliceosomal complex	Hs	cellular component
cytosol	Hs	cellular component
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
U6 snRNA binding	Hs	molecular function
intracellular ribonucleoprotein complex	Hs	cellular component
exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	Hs	biological process
U2-type prespliceosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component
spliceosomal tri-snRNP complex	Hs	cellular component
Lsm1-7-Pat1 complex	Hs	cellular component

GO (Blast)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	166	3.11e-55
protein binding	Hs	molecular function	166	3.11e-55
nucleus	Hs	cellular component	166	3.11e-55
nucleoplasm	Hs	cellular component	166	3.11e-55
spliceosomal complex	Hs	cellular component	166	3.11e-55
U5 snRNP	Hs	cellular component	50.1	2.34e-09
U7 snRNP	Hs	cellular component	50.1	2.34e-09
U1 snRNP	Hs	cellular component	50.1	2.34e-09
U2 snRNP	Hs	cellular component	50.1	2.34e-09
U4 snRNP	Hs	cellular component	50.1	2.34e-09
U6 snRNP	Hs	cellular component	166	3.11e-55
U12-type spliceosomal complex	Hs	cellular component	166	3.11e-55
cytoplasm	Hs	cellular component	50.1	2.34e-09
cytosol	Hs	cellular component	166	3.11e-55
U6 snRNA binding	Hs	molecular function	166	3.11e-55
intracellular ribonucleoprotein complex	Hs	cellular component	166	3.11e-55
small nuclear ribonucleoprotein complex	Hs	cellular component	50.1	2.34e-09
methylosome	Hs	cellular component	50.1	2.34e-09
SMN-Sm protein complex	Hs	cellular component	50.1	2.34e-09
P granule	Hs	cellular component	50.1	2.34e-09
U4/U6 x U5 tri-snRNP complex	Hs	cellular component	43.1	9.48e-07
U2-type prespliceosome	Hs	cellular component	166	3.11e-55
precatalytic spliceosome	Hs	cellular component	50.1	2.34e-09
catalytic step 2 spliceosome	Hs	cellular component	166	3.11e-55
spliceosomal tri-snRNP complex	Hs	cellular component	166	3.11e-55
Lsm1-7-Pat1 complex	Hs	cellular component	166	3.11e-55

GO (InterProScan)