Aniseed - Gene card

Gene Card

Best human hits

TPT1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008014

Gene Model ID

KH2012:KH.C7.190

Location

KhC7:5540304..5543374

Transcript Models and Sequences

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000017035
NCBI Reference Sequence	XM_002123983.4
NCBI Reference Sequence	XM_009860750.2

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

citb012n22

Plate: R1CiGC30b11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
Translation_control_tumour_CS	ProSitePatterns	Translationally controlled tumour protein, conserved site
Mss4-like_sf	SUPERFAMILY	Mss4-like superfamily
TCTP	ProSiteProfiles	Translationally controlled tumor protein (TCTP) domain
Translational_control_tumour_p	PRINTS	Translationally controlled tumour protein
Mss4/transl-control_tumor	Gene3D	Mss4/translationally controlled tumour-associated TCTP
Translational_control_tumour_p	Pfam	Translationally controlled tumour protein
Translational_control_tumour_p	PANTHER	Translationally controlled tumour protein

GOSlim

21 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
calcium ion binding	Orthology	molecular function
protein binding	Orthology	molecular function
extracellular space	Orthology	cellular component
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
microtubule binding	Orthology	molecular function
cell differentiation	Orthology	biological process
regulation of apoptotic process	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
extracellular exosome	Orthology	cellular component
endosome	Orthology	cellular component
metal ion transport	Orthology	biological process
cellular process	Orthology	biological process
cell	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular signal transduction	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
calcium ion binding	Hs	molecular function
protein binding	Hs	molecular function
extracellular space	Hs	cellular component
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
multivesicular body	Hs	cellular component
cytosol	Hs	cellular component
calcium ion transport	Hs	biological process
cellular calcium ion homeostasis	Hs	biological process
microtubule binding	Hs	molecular function
response to virus	Hs	biological process
cell differentiation	Hs	biological process
regulation of apoptotic process	Hs	biological process
negative regulation of apoptotic process	Hs	biological process
tubulin complex	Hs	cellular component
extracellular exosome	Hs	cellular component
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage	Hs	biological process

GO (Blast)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	105	7.51e-29
calcium ion binding	Hs	molecular function	105	7.51e-29
protein binding	Hs	molecular function	105	7.51e-29
extracellular space	Hs	cellular component	105	7.51e-29
nucleus	Hs	cellular component	105	7.51e-29
cytoplasm	Hs	cellular component	105	7.51e-29
multivesicular body	Hs	cellular component	105	7.51e-29
cytosol	Hs	cellular component	105	7.51e-29
microtubule binding	Hs	molecular function	105	7.51e-29
tubulin complex	Hs	cellular component	105	7.51e-29
extracellular exosome	Hs	cellular component	105	7.51e-29

GO (InterProScan)