Aniseed - Gene card

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000007884

Collections

Gateway full ORF

1 result

Gene collection 1 (N. Satoh)

4 results

cinc012k16

Plate: R1CiGC45c11

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

11 results

IPR Term	Analysis	Definition
RNA_pol_Rpb1_7	Pfam	RNA polymerase Rpb1, domain 7
RNA_pol_II_repeat_euk	ProSitePatterns	RNA polymerase II, heptapeptide repeat, eukaryotic
RNA_pol_Rpb1_4	Pfam	RNA polymerase Rpb1, domain 4
RNA_pol_Rpb1_7_sf	Gene3D	RNA polymerase Rpb1, domain 7 superfamily
Rpb1_funnel_sf	Gene3D	RNA polymerase Rpb1, funnel domain superfamily
RNA_pol_Rpb1_1	Pfam	RNA polymerase Rpb1, domain 1
RNA_pol_asu	Pfam	RNA polymerase, alpha subunit
RNA_pol_Rpb1_3	Pfam	RNA polymerase Rpb1, domain 3
RNA_pol_N	SMART	RNA polymerase, N-terminal
RNA_pol_Rpb1_5	Pfam	RNA polymerase Rpb1, domain 5
RNA_pol_Rpb1_6	Pfam	RNA polymerase Rpb1, domain 6

GOSlim

35 results

GO Term	Annotation Origin	Type
mRNA splicing, via spliceosome	Orthology	biological process
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
cytosol	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
transcription initiation from RNA polymerase II promoter	Orthology	biological process
zinc ion binding	Blast	molecular function
membrane	Blast	cellular component
RNA metabolic process	Orthology	biological process
transferase activity	Orthology	molecular function
ubiquitin protein ligase binding	Orthology	molecular function
metal ion binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
nuclear lumen	Orthology	cellular component
transferase activity, transferring phosphorus-containing groups	Orthology	molecular function
intracellular non-membrane-bounded organelle	Orthology	cellular component
RNA biosynthetic process	Orthology	biological process
nucleoplasm part	Orthology	cellular component
DNA repair	Orthology	biological process
mRNA processing	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
RNA splicing	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
developmental process	Orthology	biological process
negative regulation of gene expression	Orthology	biological process
nuclear part	Blast	cellular component

GO (Orthology)

32 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
mRNA splicing, via spliceosome	Hs	biological process
Prp19 complex	Hs	cellular component
RNA polymerase II activity	Hs	molecular function
transcription, RNA-templated	Hs	biological process
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function
RNA-directed 5'-3' RNA polymerase activity	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
DNA-directed RNA polymerase II, core complex	Hs	cellular component
cytoplasm	Hs	cellular component
transcription-coupled nucleotide-excision repair	Hs	biological process
transcription, DNA-templated	Hs	biological process
DNA-templated transcription, termination	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
transcription initiation from RNA polymerase II promoter	Hs	biological process
transcription elongation from RNA polymerase II promoter	Hs	biological process
7-methylguanosine mRNA capping	Hs	biological process
fibroblast growth factor receptor signaling pathway	Hs	biological process
RNA metabolic process	Hs	biological process
transferase activity	Hs	molecular function
nucleotidyltransferase activity	Hs	molecular function
ubiquitin protein ligase binding	Hs	molecular function
positive regulation of RNA splicing	Hs	biological process
somatic stem cell population maintenance	Hs	biological process
snRNA transcription from RNA polymerase II promoter	Hs	biological process
metal ion binding	Hs	molecular function
regulation of gene silencing by miRNA	Hs	biological process
promoter-specific chromatin binding	Hs	molecular function

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Prp19 complex	Hs	cellular component	2562	0.0
RNA polymerase I activity	Hs	molecular function	333	1.26e-92
RNA polymerase II activity	Hs	molecular function	2562	0.0
RNA polymerase III activity	Hs	molecular function	569	8.11e-176
DNA binding	Hs	molecular function	2562	0.0
chromatin binding	Hs	molecular function	569	8.11e-176
RNA binding	Hs	molecular function	2562	0.0
DNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	2562	0.0
RNA-directed 5'-3' RNA polymerase activity	Hs	molecular function	2562	0.0
protein binding	Hs	molecular function	2562	0.0
nucleus	Hs	cellular component	2562	0.0
nucleoplasm	Hs	cellular component	2562	0.0
DNA-directed RNA polymerase II, core complex	Hs	cellular component	2562	0.0
DNA-directed RNA polymerase III complex	Hs	cellular component	569	8.11e-176
nucleolus	Hs	cellular component	333	1.26e-92
DNA-directed RNA polymerase I complex	Hs	cellular component	333	1.26e-92
cytoplasm	Hs	cellular component	2562	0.0
cytosol	Hs	cellular component	569	8.11e-176
zinc ion binding	Hs	molecular function	333	1.26e-92
membrane	Hs	cellular component	569	8.11e-176
transferase activity	Hs	molecular function	2562	0.0
nucleotidyltransferase activity	Hs	molecular function	2562	0.0
ubiquitin protein ligase binding	Hs	molecular function	2562	0.0
metal ion binding	Hs	molecular function	2562	0.0
promoter-specific chromatin binding	Hs	molecular function	2562	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	1.1E-197
DNA-directed 5'-3' RNA polymerase activity	SMART	molecular function	1.1E-197
DNA-directed RNA polymerase II, core complex	ProSitePatterns	cellular component
transcription, DNA-templated	SMART	biological process	1.1E-197
transcription from RNA polymerase II promoter	ProSitePatterns	biological process

Gene Card

Best human hits

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Unique Gene ID

Gene Model ID

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Transcript Models and Sequences