Aniseed - Gene card

Gene Card

Best human hits

MRPL4

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008407

Gene Model ID

KH2012:KH.C7.55

Location

KhC7:257091..259060

Transcript Models and Sequences

KH2012:KH.C7.55.v1.C.nonSL3-1
KH2012:KH.C7.55.v1.C.nonSL4-1
KH2012:KH.C7.55.v1.C.nonSL5-1
KH2012:KH.C7.55.v1.C.nonSL6-1
KH2012:KH.C7.55.v1.C.nonSL7-1
KH2012:KH.C7.55.v1.C.nonSL8-1
KH2012:KH.C7.55.v1.R.ND1-1
KH2012:KH.C7.55.v2.C.SL2-1
KH2012:KH.C7.55.v3.A.nonSL3-1
KH2012:KH.C7.55.v3.A.nonSL4-1
KH2012:KH.C7.55.v3.A.nonSL5-1
KH2012:KH.C7.55.v3.A.nonSL6-1
KH2012:KH.C7.55.v3.A.nonSL7-1
KH2012:KH.C7.55.v3.A.nonSL8-1
KH2012:KH.C7.55.v3.R.ND1-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000003144
NCBI Reference Sequence	XM_002122078.4
NCBI Reference Sequence	XM_018812616.1
NCBI Reference Sequence	XM_018812617.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cieg052c24

Plate: R1CiGC23h12

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Ribosomal_L4_dom_sf	SUPERFAMILY	Ribosomal protein L4 domain superfamily
Ribosomal_L4/L1e	Pfam	Ribosomal protein L4/L1e
Ribosomal_L4_dom_sf	Gene3D	Ribosomal protein L4 domain superfamily
Ribosomal_uL4/L1e	PANTHER	50S ribosomal protein uL4

GOSlim

8 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
mitochondrion	Orthology	cellular component
mitochondrial inner membrane	Orthology	cellular component
ribosome	Orthology	cellular component
mitochondrial matrix	Orthology	cellular component
cytosol	Orthology	cellular component

GO (Orthology)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial inner membrane	Hs	cellular component
mitochondrial large ribosomal subunit	Hs	cellular component
ribosome	Hs	cellular component
translation	Hs	biological process
cytosolic ribosome	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
mitochondrial translational elongation	Hs	biological process
mitochondrial translational termination	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	146	5.65e-41
structural constituent of ribosome	Hs	molecular function	146	5.65e-41
protein binding	Hs	molecular function	146	5.65e-41
mitochondrion	Hs	cellular component	146	5.65e-41
mitochondrial inner membrane	Hs	cellular component	146	5.65e-41
mitochondrial large ribosomal subunit	Hs	cellular component	146	5.65e-41
ribosome	Hs	cellular component	146	5.65e-41
cytosolic ribosome	Hs	cellular component	146	5.65e-41
intracellular ribonucleoprotein complex	Hs	cellular component	146	5.65e-41

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	Gene3D	molecular function	8.9E-56
ribosome	Gene3D	cellular component	8.9E-56
translation	Gene3D	biological process	8.9E-56