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Gene Card

Best human hits

TBX1; TBX10; TBX20

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008493

Gene Model ID

KH2012:KH.C7.628

Location

KhC7:1979016..1985224

Transcript Models and Sequences

  KH2012:KH.C7.628.v1.A.SL1-1

External Database Gene Card

External database links

1 result

Database Gene ID
ENSEMBL ENSCING00000004291
Collections
WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
TF_T-box PANTHER Transcription factor, T-box
TF_T-box_CS ProSitePatterns Transcription factor, T-box, conserved site
TF_T-box CDD Transcription factor, T-box
TF_T-box ProSiteProfiles Transcription factor, T-box
TF_T-box PRINTS Transcription factor, T-box
TF_T-box Pfam Transcription factor, T-box
T-box_sf Gene3D T-box superfamily
TF_T-box SMART Transcription factor, T-box
p53-like_TF_DNA-bd SUPERFAMILY p53-like transcription factor, DNA-binding

GOSlim

39 results

GO Term Annotation Origin Type
RNA polymerase II regulatory region sequence-specific DNA binding Blast molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding Blast molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding Orthology molecular function
angiogenesis Orthology biological process
blood vessel development Orthology biological process
DNA binding Orthology molecular function
transcription factor activity, sequence-specific DNA binding Orthology molecular function
nucleus Orthology cellular component
cytoplasm Blast cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
multicellular organism development Orthology biological process
heart development Orthology biological process
sensory perception of sound Orthology biological process
cell proliferation Orthology biological process
positive regulation of cell proliferation Orthology biological process
anatomical structure morphogenesis Orthology biological process
protein homodimerization activity Orthology molecular function
sequence-specific DNA binding Orthology molecular function
positive regulation of transcription, DNA-templated Orthology biological process
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
blood vessel morphogenesis Orthology biological process
cell differentiation Orthology biological process
cell migration Orthology biological process
cell development Orthology biological process
animal organ development Orthology biological process
protein phosphorylation Orthology biological process
vasculature development Orthology biological process
anatomical structure development Orthology biological process
intracellular signal transduction Orthology biological process
positive regulation of signal transduction Orthology biological process
signal transduction Orthology biological process
immune system process Orthology biological process
system development Orthology biological process
head development Orthology biological process
response to lipid Orthology biological process
cellular response to organic substance Orthology biological process
transcription factor binding Blast molecular function

GO (Orthology)

53 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function
angiogenesis Hs biological process
blood vessel development Hs biological process
cell fate specification Hs biological process
neural crest cell migration Hs biological process
positive regulation of protein phosphorylation Hs biological process
lymph vessel development Hs biological process
heart morphogenesis Hs biological process
outflow tract morphogenesis Hs biological process
DNA binding Hs molecular function
transcription factor activity, sequence-specific DNA binding Hs molecular function
nucleus Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
multicellular organism development Hs biological process
determination of left/right symmetry Hs biological process
pattern specification process Hs biological process
mesoderm development Hs biological process
heart development Hs biological process
muscle organ development Hs biological process
sensory perception of sound Hs biological process
cell proliferation Hs biological process
positive regulation of cell proliferation Hs biological process
anatomical structure morphogenesis Hs biological process
anterior/posterior pattern specification Hs biological process
epithelial cell differentiation Hs biological process
thyroid gland development Hs biological process
social behavior Hs biological process
ear morphogenesis Hs biological process
inner ear morphogenesis Hs biological process
muscle cell fate commitment Hs biological process
protein homodimerization activity Hs molecular function
positive regulation of MAPK cascade Hs biological process
sequence-specific DNA binding Hs molecular function
negative regulation of cell differentiation Hs biological process
positive regulation of transcription, DNA-templated Hs biological process
positive regulation of transcription from RNA polymerase II promoter Hs biological process
retinoic acid receptor signaling pathway Hs biological process
blood vessel morphogenesis Hs biological process
thymus development Hs biological process
muscle organ morphogenesis Hs biological process
embryonic cranial skeleton morphogenesis Hs biological process
embryonic viscerocranium morphogenesis Hs biological process
semicircular canal morphogenesis Hs biological process
artery morphogenesis Hs biological process
positive regulation of epithelial cell proliferation Hs biological process
parathyroid gland development Hs biological process
soft palate development Hs biological process
pharyngeal system development Hs biological process
face morphogenesis Hs biological process
muscle tissue morphogenesis Hs biological process
cellular response to retinoic acid Hs biological process

GO (Blast)

13 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA polymerase II regulatory region sequence-specific DNA binding Hs molecular function 230 1.99e-71
RNA polymerase II core promoter proximal region sequence-specific DNA binding Hs molecular function 230 1.99e-71
RNA polymerase II transcription factor activity, sequence-specific DNA binding Hs molecular function 305 4.58e-100
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding Hs molecular function 230 1.99e-71
RNA polymerase II transcription factor binding Hs molecular function 230 1.99e-71
RNA polymerase II activating transcription factor binding Hs molecular function 230 1.99e-71
RNA polymerase II transcription coactivator activity Hs molecular function 230 1.99e-71
DNA binding Hs molecular function 305 4.58e-100
transcription factor activity, sequence-specific DNA binding Hs molecular function 305 4.58e-100
nucleus Hs cellular component 305 4.58e-100
cytoplasm Hs cellular component 230 1.99e-71
protein homodimerization activity Hs molecular function 305 4.58e-100
sequence-specific DNA binding Hs molecular function 305 4.58e-100

GO (InterProScan)

3 results

GO Term Analysis Type e-value
transcription factor activity, sequence-specific DNA binding PANTHER molecular function 9.4E-115
nucleus PANTHER cellular component 9.4E-115
regulation of transcription, DNA-templated PANTHER biological process 9.4E-115

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