Aniseed - Gene card

Gene Card

Best human hits

GNL2; GNL3L; LSG1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008544

Gene Model ID

KH2012:KH.C7.675

Location

KhC7:2900727..2903937

Transcript Models and Sequences

KH2012:KH.C7.675.v1.A.nonSL2-1
KH2012:KH.C7.675.v1.A.nonSL3-1
KH2012:KH.C7.675.v1.A.SL1-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000007079
NCBI Reference Sequence	XM_002124642.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl061p22

Plate: R1CiGC15m06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
GTP_binding_domain	Pfam	GTP binding domain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
G_CP_dom	ProSiteProfiles	Circularly permuted (CP)-type guanine nucleotide-binding (G) domain

GOSlim

18 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
RNA binding	Blast	molecular function
GTPase activity	Orthology	molecular function
protein binding	Blast	molecular function
GTP binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleolus	Blast	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Blast	cellular component
nuclear body	Orthology	cellular component
hydrolase activity	Orthology	molecular function
intracellular transport	Orthology	biological process
nuclear part	Blast	cellular component
macromolecular complex	Blast	cellular component

GO (Orthology)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
GTPase activity	Hs	molecular function
GTP binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
Cajal body	Hs	cellular component
protein transport	Hs	biological process
membrane	Hs	cellular component
nuclear body	Hs	cellular component
hydrolase activity	Hs	molecular function
ribosome biogenesis	Hs	biological process
nuclear export	Hs	biological process

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	273	1.60e-83
RNA binding	Hs	molecular function	126	1.12e-30
GTPase activity	Hs	molecular function	273	1.60e-83
protein binding	Hs	molecular function	118	4.88e-28
GTP binding	Hs	molecular function	273	1.60e-83
nucleus	Hs	cellular component	273	1.60e-83
telomerase holoenzyme complex	Hs	cellular component	118	4.88e-28
nucleolus	Hs	cellular component	126	1.12e-30
cytoplasm	Hs	cellular component	273	1.60e-83
endoplasmic reticulum	Hs	cellular component	273	1.60e-83
cytosol	Hs	cellular component	273	1.60e-83
Cajal body	Hs	cellular component	273	1.60e-83
membrane	Hs	cellular component	273	1.60e-83
integral component of membrane	Hs	cellular component	126	1.12e-30
nuclear body	Hs	cellular component	273	1.60e-83
hydrolase activity	Hs	molecular function	273	1.60e-83

GO (InterProScan)