Aniseed - Gene card

Gene Card

Best human hits

AC135178.2; RPL26; RPL26L1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008572

Gene Model ID

KH2012:KH.C7.70

Location

KhC7:571206..572730

Transcript Models and Sequences

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000003981
NCBI Reference Sequence	XM_002119162.4
NCBI Reference Sequence	XM_002119274.4
NCBI Reference Sequence	XM_009860624.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

4 results

ciad049o11

Plate: R1CiGC05g06

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term	Analysis	Definition
KOW	SMART	KOW
Ribosomal_L26/L24P_euk/arc	PANTHER	Ribosomal protein L26/L24, eukaryotic/archaeal
Ribosomal_L26/L24P_euk/arc	Pfam	Ribosomal protein L26/L24, eukaryotic/archaeal
Ribosomal_L26/L24P_euk/arc	TIGRFAM	Ribosomal protein L26/L24, eukaryotic/archaeal
Ribosomal_L24/26_CS	ProSitePatterns	Ribosomal protein L24/L26, conserved site
Rib_L2_dom2	Gene3D	Ribosomal protein L2, domain 2
KOW	Pfam	KOW
Translation_prot_SH3-like_sf	SUPERFAMILY	Translation protein SH3-like domain superfamily
Ribosomal_L26/L24P_euk/arc	Hamap	Ribosomal protein L26/L24, eukaryotic/archaeal

GOSlim

22 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
positive regulation of gene expression	Orthology	biological process
intracellular signal transduction	Orthology	biological process
cellular response to DNA damage stimulus	Orthology	biological process
positive regulation of signal transduction	Orthology	biological process
positive regulation of apoptotic process	Orthology	biological process
macromolecular complex	Orthology	cellular component

GO (Orthology)

29 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
large ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
cytosolic large ribosomal subunit	Hs	cellular component
cytosolic ribosome	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
cellular response to UV	Hs	biological process
ribosomal large subunit biogenesis	Hs	biological process
positive regulation of translation	Hs	biological process
mRNA 5'-UTR binding	Hs	molecular function
extracellular exosome	Hs	cellular component
cellular response to ionizing radiation	Hs	biological process
cellular response to gamma radiation	Hs	biological process
positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	Hs	biological process
ribonucleoprotein complex	Hs	cellular component

GO (Blast)

17 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	230	3.58e-79
structural constituent of ribosome	Hs	molecular function	230	3.58e-79
protein binding	Hs	molecular function	230	3.58e-79
intracellular	Hs	cellular component	230	3.58e-79
nucleoplasm	Hs	cellular component	230	3.58e-79
nucleolus	Hs	cellular component	230	3.58e-79
cytoplasm	Hs	cellular component	230	3.58e-79
cytosol	Hs	cellular component	230	3.58e-79
ribosome	Hs	cellular component	230	3.58e-79
large ribosomal subunit	Hs	cellular component	230	3.58e-79
membrane	Hs	cellular component	230	3.58e-79
cytosolic large ribosomal subunit	Hs	cellular component	230	3.58e-79
cytosolic ribosome	Hs	cellular component	230	3.58e-79
intracellular ribonucleoprotein complex	Hs	cellular component	230	3.58e-79
mRNA 5'-UTR binding	Hs	molecular function	230	3.58e-79
extracellular exosome	Hs	cellular component	230	3.58e-79
ribonucleoprotein complex	Hs	cellular component	230	3.58e-79

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	9.7E-73
intracellular	ProSitePatterns	cellular component
ribosome	ProSitePatterns	cellular component
translation	PANTHER	biological process	9.7E-73
large ribosomal subunit	PANTHER	cellular component	9.7E-73