Aniseed - Gene card

External Database Gene Card

External database links

No result

Collections

Gene collection 1 (N. Satoh)

2 results

cilv080b23

Plate: R1CiGC44h13

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
Homeobox_CS	ProSitePatterns	Homeobox, conserved site
Homeobox-like_sf	SUPERFAMILY	Homeobox-like domain superfamily
Homeobox_dom	CDD	Homeobox domain
Homeobox_dom	ProSiteProfiles	Homeobox domain
Homeobox_dom	SMART	Homeobox domain
HTH_motif	PRINTS	Helix-turn-helix motif
Homeobox_dom	Pfam	Homeobox domain
Homeobox_metazoa	PRINTS	Homeobox domain, metazoa

GOSlim

36 results

GO Term	Annotation Origin	Type
negative regulation of transcription from RNA polymerase II promoter	Orthology	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Orthology	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
DNA binding	Orthology	molecular function
chromatin binding	Orthology	molecular function
transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Blast	cellular component
transcription, DNA-templated	Orthology	biological process
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
multicellular organism development	Orthology	biological process
nervous system development	Orthology	biological process
cell differentiation	Orthology	biological process
sequence-specific DNA binding	Orthology	molecular function
transcription regulatory region DNA binding	Blast	molecular function
positive regulation of transcription from RNA polymerase II promoter	Orthology	biological process
anatomical structure formation involved in morphogenesis	Orthology	biological process
head development	Orthology	biological process
system development	Orthology	biological process
brain development	Orthology	biological process
neuron differentiation	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
cell surface receptor signaling pathway	Orthology	biological process
cellular response to organic substance	Orthology	biological process
negative regulation of signal transduction	Orthology	biological process
anatomical structure development	Orthology	biological process
animal organ development	Orthology	biological process
negative regulation of apoptotic process	Orthology	biological process
Notch signaling pathway	Orthology	biological process
cell development	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
intracellular non-membrane-bounded organelle	Blast	cellular component
nuclear lumen	Blast	cellular component

GO (Orthology)

37 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
negative regulation of transcription from RNA polymerase II promoter	Hs	biological process
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
skeletal system development	Hs	biological process
DNA binding	Hs	molecular function
chromatin binding	Hs	molecular function
transcription factor activity, sequence-specific DNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
transcription, DNA-templated	Hs	biological process
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
multicellular organism development	Hs	biological process
nervous system development	Hs	biological process
proximal/distal pattern formation	Hs	biological process
subpallium development	Hs	biological process
forebrain neuron differentiation	Hs	biological process
cell differentiation	Hs	biological process
embryonic limb morphogenesis	Hs	biological process
negative regulation of BMP signaling pathway	Hs	biological process
epithelial cell differentiation	Hs	biological process
inner ear morphogenesis	Hs	biological process
negative regulation of neuron apoptotic process	Hs	biological process
sequence-specific DNA binding	Hs	molecular function
positive regulation of cell differentiation	Hs	biological process
negative regulation of Notch signaling pathway	Hs	biological process
positive regulation of transcription from RNA polymerase II promoter	Hs	biological process
negative regulation of photoreceptor cell differentiation	Hs	biological process
anatomical structure formation involved in morphogenesis	Hs	biological process
embryonic skeletal system development	Hs	biological process
positive regulation of epithelial cell proliferation	Hs	biological process
palate development	Hs	biological process
head development	Hs	biological process
cellular response to transforming growth factor beta stimulus	Hs	biological process
positive regulation of amacrine cell differentiation	Hs	biological process
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nuclear chromatin	Hs	cellular component	133	7.08e-36
RNA polymerase II regulatory region sequence-specific DNA binding	Hs	molecular function	136	2.40e-37
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	133	7.08e-36
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	139	4.08e-38
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	133	7.08e-36
DNA binding	Hs	molecular function	139	4.08e-38
chromatin binding	Hs	molecular function	136	2.40e-37
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	139	4.08e-38
protein binding	Hs	molecular function	136	2.40e-37
nucleus	Hs	cellular component	139	4.08e-38
cytoplasm	Hs	cellular component	133	7.08e-36
sequence-specific DNA binding	Hs	molecular function	139	4.08e-38
transcription regulatory region DNA binding	Hs	molecular function	133	7.08e-36
HMG box domain binding	Hs	molecular function	133	7.08e-36

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
DNA binding	SMART	molecular function	4.4E-25
regulation of transcription, DNA-templated	ProSitePatterns	biological process
sequence-specific DNA binding	ProSitePatterns	molecular function

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences