Aniseed - Gene card

Gene Card

Best human hits

ALG13; SMNDC1; TDRD3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008708

Gene Model ID

KH2012:KH.C8.105

Location

KhC8:1243004..1245532

Transcript Models and Sequences

KH2012:KH.C8.105.v1.A.nonSL2-1
KH2012:KH.C8.105.v1.A.nonSL3-1
KH2012:KH.C8.105.v1.A.nonSL4-1
KH2012:KH.C8.105.v1.A.nonSL6-1
KH2012:KH.C8.105.v1.A.nonSL7-1
KH2012:KH.C8.105.v1.A.nonSL8-1
KH2012:KH.C8.105.v1.A.SL5-1
KH2012:KH.C8.105.v2.A.ND1-1
KH2012:KH.C8.105.v2.A.nonSL2-1
KH2012:KH.C8.105.v2.A.nonSL3-1
KH2012:KH.C8.105.v2.A.nonSL4-1
KH2012:KH.C8.105.v2.A.nonSL6-1
KH2012:KH.C8.105.v2.A.nonSL7-1
KH2012:KH.C8.105.v2.A.nonSL8-1
KH2012:KH.C8.105.v2.A.SL5-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000008082
NCBI Reference Sequence	XM_002129864.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad029c18

Plate: R1CiGC03l05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

1 result

IPR Term	Analysis	Definition
Tudor	ProSiteProfiles	Tudor domain

GOSlim

25 results

GO Term	Annotation Origin	Type
RNA splicing, via transesterification reactions	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
chromatin binding	Blast	molecular function
transcription coactivator activity	Blast	molecular function
RNA binding	Orthology	molecular function
catalytic activity	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Blast	cellular component
endoplasmic reticulum membrane	Blast	cellular component
Golgi apparatus	Blast	cellular component
cytosol	Blast	cellular component
mRNA processing	Orthology	biological process
apoptotic process	Orthology	biological process
peptidase activity	Blast	molecular function
RNA splicing	Orthology	biological process
nuclear speck	Orthology	cellular component
transferase activity	Blast	molecular function
hydrolase activity	Blast	molecular function
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
nuclear body	Orthology	cellular component
peptidase activity, acting on L-amino acid peptides	Blast	molecular function

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA splicing, via transesterification reactions	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
cytoplasm	Hs	cellular component
mRNA processing	Hs	biological process
apoptotic process	Hs	biological process
RNA splicing	Hs	biological process
Cajal body	Hs	cellular component
nuclear speck	Hs	cellular component

GO (Blast)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromatin binding	Hs	molecular function	37.4	0.006
transcription coactivator activity	Hs	molecular function	37.4	0.006
RNA binding	Hs	molecular function	190	1.54e-60
catalytic activity	Hs	molecular function	38.5	0.003
N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity	Hs	molecular function	38.5	0.003
protein binding	Hs	molecular function	190	1.54e-60
nucleus	Hs	cellular component	190	1.54e-60
nucleoplasm	Hs	cellular component	190	1.54e-60
spliceosomal complex	Hs	cellular component	190	1.54e-60
cytoplasm	Hs	cellular component	190	1.54e-60
endoplasmic reticulum	Hs	cellular component	38.5	0.003
endoplasmic reticulum membrane	Hs	cellular component	38.5	0.003
Golgi apparatus	Hs	cellular component	37.4	0.006
cytosol	Hs	cellular component	37.4	0.006
peptidase activity	Hs	molecular function	38.5	0.003
cysteine-type peptidase activity	Hs	molecular function	38.5	0.003
Cajal body	Hs	cellular component	190	1.54e-60
nuclear speck	Hs	cellular component	190	1.54e-60
transferase activity	Hs	molecular function	38.5	0.003
transferase activity, transferring glycosyl groups	Hs	molecular function	38.5	0.003
transferase activity, transferring hexosyl groups	Hs	molecular function	38.5	0.003
hydrolase activity	Hs	molecular function	38.5	0.003
methylated histone binding	Hs	molecular function	37.4	0.006
exon-exon junction complex	Hs	cellular component	37.4	0.006
thiol-dependent ubiquitinyl hydrolase activity	Hs	molecular function	38.5	0.003
UDP-N-acetylglucosamine transferase complex	Hs	cellular component	38.5	0.003

GO (InterProScan)