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Gene Card

Best human hits

RPL18A

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008712

Gene Model ID

KH2012:KH.C8.109

Location

KhC8:5232719..5235762

Transcript Models and Sequences

  KH2012:KH.C8.109.v1.A.nonSL10-1
KH2012:KH.C8.109.v1.A.nonSL11-1
KH2012:KH.C8.109.v1.A.nonSL12-1
KH2012:KH.C8.109.v1.A.nonSL13-1
KH2012:KH.C8.109.v1.A.nonSL14-1
KH2012:KH.C8.109.v1.A.nonSL15-1
KH2012:KH.C8.109.v1.A.nonSL16-1
KH2012:KH.C8.109.v1.A.nonSL17-1
KH2012:KH.C8.109.v1.A.nonSL18-1
KH2012:KH.C8.109.v1.A.nonSL19-1
KH2012:KH.C8.109.v1.A.nonSL20-1
KH2012:KH.C8.109.v1.A.nonSL4-1
KH2012:KH.C8.109.v1.A.nonSL6-1
KH2012:KH.C8.109.v1.A.nonSL7-1
KH2012:KH.C8.109.v1.A.nonSL8-1
KH2012:KH.C8.109.v1.A.nonSL9-1
KH2012:KH.C8.109.v2.A.ND3-1
KH2012:KH.C8.109.v2.A.nonSL2-1
KH2012:KH.C8.109.v2.A.nonSL5-1
KH2012:KH.C8.109.v2.A.SL1-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005643
NCBI Reference Sequence XM_002122329.4
Collections

Gateway full ORF

2 results

cima811400

Plate: VES58_B03

cima882652

Plate: VES69_P04

Gene collection 1 (N. Satoh)

2 results

ciad009g18

Plate: R1CiGC01n12

cibd068e02

Plate: R1CiGC38b18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Ribosomal_L18a/L20_eukaryotes PIRSF 60S ribosomal protein L18a/ L20, eukaryotes
50S_L18Ae/Ribosomal_L18a/L20 PANTHER 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a
Ribosomal_L18a//L18Ae/LX Pfam Ribosomal protein 50S-L18Ae/60S-L20/60S-L18A
50S_L18Ae/Ribosomal_L18a/L20 Hamap 50S ribosomal protein L18Ae/60S ribosomal protein L20 and L18a

GOSlim

11 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
RNA binding Orthology molecular function
structural constituent of ribosome Orthology molecular function
protein binding Orthology molecular function
cytosol Orthology cellular component
ribosome Orthology cellular component
translational initiation Orthology biological process
SRP-dependent cotranslational protein targeting to membrane Orthology biological process
membrane Orthology cellular component
RNA processing Orthology biological process
intracellular organelle part Orthology cellular component

GO (Orthology)

15 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
cytoplasmic translation Hs biological process
RNA binding Hs molecular function
structural constituent of ribosome Hs molecular function
protein binding Hs molecular function
cytosol Hs cellular component
ribosome Hs cellular component
rRNA processing Hs biological process
translation Hs biological process
translational initiation Hs biological process
SRP-dependent cotranslational protein targeting to membrane Hs biological process
membrane Hs cellular component
cytosolic large ribosomal subunit Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component
polysomal ribosome Hs cellular component

GO (Blast)

9 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 257 8.19e-89
structural constituent of ribosome Hs molecular function 257 8.19e-89
protein binding Hs molecular function 257 8.19e-89
cytosol Hs cellular component 257 8.19e-89
ribosome Hs cellular component 257 8.19e-89
membrane Hs cellular component 257 8.19e-89
cytosolic large ribosomal subunit Hs cellular component 257 8.19e-89
intracellular ribonucleoprotein complex Hs cellular component 257 8.19e-89
polysomal ribosome Hs cellular component 257 8.19e-89

GO (InterProScan)

3 results

GO Term Analysis Type e-value
structural constituent of ribosome PIRSF molecular function 5.2E-67
ribosome PIRSF cellular component 5.2E-67
translation PIRSF biological process 5.2E-67

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