Aniseed - Gene card

Gene Card

Best human hits

RPS28

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008823

Gene Model ID

KH2012:KH.C8.209

Location

KhC8:2359006..2359948

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000013272
NCBI Reference Sequence	XR_717335.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

citb030l24

Plate: R1CiGC31l11

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

7 results

IPR Term	Analysis	Definition
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
Ribosomal_S28e	ProDom	Ribosomal protein S28e
Ribosomal_S28e	Pfam	Ribosomal protein S28e
Ribosomal_S28e	CDD	Ribosomal protein S28e
Ribosomal_S28e	Hamap	Ribosomal protein S28e
Ribosomal_S28e_CS	ProSitePatterns	Ribosomal protein S28e conserved site
Ribosomal_S28e	PANTHER	Ribosomal protein S28e

GOSlim

17 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal small subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
cytoplasmic translation	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleoplasm	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
rough endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
small ribosomal subunit	Hs	cellular component
cytosolic small ribosomal subunit	Hs	cellular component
maturation of SSU-rRNA	Hs	biological process
intracellular ribonucleoprotein complex	Hs	cellular component
ribosome biogenesis	Hs	biological process
ribosomal small subunit biogenesis	Hs	biological process
polysomal ribosome	Hs	cellular component
extracellular exosome	Hs	cellular component
cytoplasmic side of rough endoplasmic reticulum membrane	Hs	cellular component

GO (Blast)

16 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	114	2.09e-35
structural constituent of ribosome	Hs	molecular function	114	2.09e-35
protein binding	Hs	molecular function	114	2.09e-35
intracellular	Hs	cellular component	114	2.09e-35
nucleoplasm	Hs	cellular component	114	2.09e-35
cytoplasm	Hs	cellular component	114	2.09e-35
endoplasmic reticulum	Hs	cellular component	114	2.09e-35
rough endoplasmic reticulum	Hs	cellular component	114	2.09e-35
cytosol	Hs	cellular component	114	2.09e-35
ribosome	Hs	cellular component	114	2.09e-35
small ribosomal subunit	Hs	cellular component	114	2.09e-35
cytosolic small ribosomal subunit	Hs	cellular component	114	2.09e-35
intracellular ribonucleoprotein complex	Hs	cellular component	114	2.09e-35
polysomal ribosome	Hs	cellular component	114	2.09e-35
extracellular exosome	Hs	cellular component	114	2.09e-35
cytoplasmic side of rough endoplasmic reticulum membrane	Hs	cellular component	114	2.09e-35

GO (InterProScan)

4 results

GO Term	Analysis	Type	e-value
structural constituent of ribosome	PANTHER	molecular function	1.2E-38
intracellular	PANTHER	cellular component	1.2E-38
ribosome	PANTHER	cellular component	1.2E-38
translation	PANTHER	biological process	1.2E-38

Gene Card

Best human hits

Species

Unique Gene ID

Gene Model ID

Location

Transcript Models and Sequences

External database links

Gateway full ORF

cima819265

cima861026

Gene collection 1 (N. Satoh)

cicl004m02

citb030l24

Regulatory Regions

InterPro

GOSlim

GO (Orthology)

GO (Blast)

GO (InterProScan)