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Gene Card

Best human hits

MED16

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008841

Gene Model ID

KH2012:KH.C8.225

Location

KhC8:3805865..3814913

Transcript Models and Sequences

  KH2012:KH.C8.225.v1.A.SL2-1
KH2012:KH.C8.225.v1.R.ND1-1
KH2012:KH.C8.225.v2.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000007303
NCBI Reference Sequence XM_018812787.1
Collections

Gateway full ORF

2 results

cima88372

Plate: VES57_C13

cima823093

Plate: VES60_C12

Gene collection 1 (N. Satoh)

2 results

citb3h21

Plate: R1CiGC28p24

cign015a18

Plate: R1CiGC42a03

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term Analysis Definition
Mediator_Med16 Pfam Mediator complex, subunit Med16
WD40/YVTN_repeat-like_dom_sf Gene3D WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat_dom_sf SUPERFAMILY WD40-repeat-containing domain superfamily

GOSlim

20 results

GO Term Annotation Origin Type
transcription cofactor activity Orthology molecular function
transcription coactivator activity Orthology molecular function
catalytic activity Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
regulation of transcription from RNA polymerase II promoter Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
membrane Orthology cellular component
positive regulation of transcription, DNA-templated Orthology biological process
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
signal transduction Orthology biological process
response to lipid Orthology biological process
cellular response to organic substance Orthology biological process
receptor binding Orthology molecular function
transcription factor binding Orthology molecular function

GO (Orthology)

20 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
transcription cofactor activity Hs molecular function
transcription coactivator activity Hs molecular function
catalytic activity Hs molecular function
receptor activity Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
regulation of transcription from RNA polymerase II promoter Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
membrane Hs cellular component
mediator complex Hs cellular component
thyroid hormone receptor coactivator activity Hs molecular function
intracellular steroid hormone receptor signaling pathway Hs biological process
androgen receptor signaling pathway Hs biological process
vitamin D receptor binding Hs molecular function
positive regulation of transcription, DNA-templated Hs biological process
thyroid hormone receptor binding Hs molecular function

GO (Blast)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription cofactor activity Hs molecular function 473 4.01e-154
transcription coactivator activity Hs molecular function 473 4.01e-154
catalytic activity Hs molecular function 473 4.01e-154
receptor activity Hs molecular function 473 4.01e-154
protein binding Hs molecular function 473 4.01e-154
nucleus Hs cellular component 473 4.01e-154
nucleoplasm Hs cellular component 473 4.01e-154
membrane Hs cellular component 473 4.01e-154
mediator complex Hs cellular component 473 4.01e-154
thyroid hormone receptor coactivator activity Hs molecular function 473 4.01e-154
vitamin D receptor binding Hs molecular function 473 4.01e-154
thyroid hormone receptor binding Hs molecular function 473 4.01e-154

GO (InterProScan)

1 result

GO Term Analysis Type e-value
protein binding SUPERFAMILY molecular function 1.08E-9

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