Aniseed - Gene card

Gene Card

Best human hits

FAF1; FAF2; UBXN7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008912

Gene Model ID

KH2012:KH.C8.291

Location

KhC8:4116917..4123836

Transcript Models and Sequences

KH2012:KH.C8.291.v1.A.SL1-2
KH2012:KH.C8.291.v1.A.SL2-2
KH2012:KH.C8.291.v1.A.SL5-2
KH2012:KH.C8.291.v2.A.ND3-1
KH2012:KH.C8.291.v3.A.SL1-1
KH2012:KH.C8.291.v3.A.SL2-1
KH2012:KH.C8.291.v3.A.SL5-1
KH2012:KH.C8.291.v4.A.ND4-1

External Database Gene Card

External database links

4 results

Database	Gene ID
ENSEMBL	ENSCING00000007298
ENSEMBL	ENSCING00000018740
NCBI Reference Sequence	XM_002120616.4
NCBI Reference Sequence	XM_002125032.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

2 results

cits034f09

Plate: R1CiGC34e24

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
UAS	SMART	UAS
Thioredoxin-like_sf	SUPERFAMILY	Thioredoxin-like superfamily
Ubiquitin-like_domsf	SUPERFAMILY	Ubiquitin-like domain superfamily
UBX_dom	ProSiteProfiles	UBX domain
UBX_dom	Pfam	UBX domain
UBX_dom	SMART	UBX domain

GOSlim

37 results

GO Term	Annotation Origin	Type
protein binding	Orthology	molecular function
extracellular region	Blast	cellular component
nucleus	Orthology	cellular component
nuclear envelope	Orthology	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Blast	cellular component
cytosol	Orthology	cellular component
apoptotic process	Orthology	biological process
transcription factor binding	Orthology	molecular function
cell death	Orthology	biological process
positive regulation of cell death	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
nuclear body	Blast	cellular component
protein kinase binding	Orthology	molecular function
ubiquitin protein ligase binding	Orthology	molecular function
positive regulation of apoptotic process	Orthology	biological process
perinuclear region of cytoplasm	Orthology	cellular component
protein kinase activity	Orthology	molecular function
regulation of cellular metabolic process	Orthology	biological process
enzyme regulator activity	Orthology	molecular function
cell adhesion	Orthology	biological process
plasma membrane part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
protein metabolic process	Orthology	biological process
proteolysis	Orthology	biological process
regulation of catalytic activity	Orthology	biological process
intracellular non-membrane-bounded organelle	Blast	cellular component
enzyme binding	Blast	molecular function
cytoplasmic vesicle	Blast	cellular component
lysosome	Blast	cellular component
vacuolar part	Blast	cellular component
endomembrane system	Blast	cellular component
intracellular organelle lumen	Blast	cellular component
hydrolase activity	Blast	molecular function

GO (Orthology)

26 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nuclear envelope	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
apoptotic process	Hs	biological process
cell death	Hs	biological process
positive regulation of cell death	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
protein kinase regulator activity	Hs	molecular function
protein kinase binding	Hs	molecular function
protein domain specific binding	Hs	molecular function
regulation of cell adhesion	Hs	biological process
heat shock protein binding	Hs	molecular function
CD95 death-inducing signaling complex	Hs	cellular component
positive regulation of protein complex assembly	Hs	biological process
ubiquitin protein ligase binding	Hs	molecular function
VCP-NPL4-UFD1 AAA ATPase complex	Hs	cellular component
regulation of protein catabolic process	Hs	biological process
positive regulation of apoptotic process	Hs	biological process
ubiquitin binding	Hs	molecular function
proteasome-mediated ubiquitin-dependent protein catabolic process	Hs	biological process
regulation of protein kinase activity	Hs	biological process
perinuclear region of cytoplasm	Hs	cellular component
NF-kappaB binding	Hs	molecular function

GO (Blast)