Aniseed - Gene card

Gene Card

Best human hits

RER1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008964

Gene Model ID

KH2012:KH.C8.34

Location

KhC8:2993126..2996709

Transcript Models and Sequences

KH2012:KH.C8.34.v1.A.SL1-1
KH2012:KH.C8.34.v1.A.SL2-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000005442
NCBI Reference Sequence	XM_002125851.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg022p20

Plate: R1CiGC19i05

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Rer1	Pfam	Retrieval of early ER protein Rer1
Rer1	PANTHER	Retrieval of early ER protein Rer1
Rer1	PIRSF	Retrieval of early ER protein Rer1

GOSlim

12 results

GO Term	Annotation Origin	Type
Golgi membrane	Orthology	cellular component
Golgi apparatus	Orthology	cellular component
plasma membrane	Orthology	cellular component
cell surface	Orthology	cellular component
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
intracellular membrane-bounded organelle	Orthology	cellular component
cellular component organization	Orthology	biological process
receptor binding	Orthology	molecular function
protein localization to membrane	Orthology	biological process
membrane organization	Orthology	biological process

GO (Orthology)

13 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
Golgi membrane	Hs	cellular component
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component
Golgi apparatus	Hs	cellular component
plasma membrane	Hs	cellular component
retrograde vesicle-mediated transport, Golgi to ER	Hs	biological process
neuromuscular junction development	Hs	biological process
cell surface	Hs	cellular component
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
integral component of Golgi membrane	Hs	cellular component
acetylcholine receptor binding	Hs	molecular function
skeletal muscle acetylcholine-gated channel clustering	Hs	biological process
positive regulation of protein localization to plasma membrane	Hs	biological process

GO (Blast)

9 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
Golgi membrane	Hs	cellular component	271	7.97e-94
endoplasmic reticulum-Golgi intermediate compartment	Hs	cellular component	271	7.97e-94
Golgi apparatus	Hs	cellular component	271	7.97e-94
plasma membrane	Hs	cellular component	271	7.97e-94
cell surface	Hs	cellular component	271	7.97e-94
membrane	Hs	cellular component	271	7.97e-94
integral component of membrane	Hs	cellular component	271	7.97e-94
integral component of Golgi membrane	Hs	cellular component	271	7.97e-94
acetylcholine receptor binding	Hs	molecular function	271	7.97e-94

GO (InterProScan)