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Gene Card

Best human hits

HPCA; HPCAL1; NCALD

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00008966

Gene Model ID

KH2012:KH.C8.342

Location

KhC8:5984926..5996383

Transcript Models and Sequences

  KH2012:KH.C8.342.v1.A.SL1-1
KH2012:KH.C8.342.v1.A.SL2-1
KH2012:KH.C8.342.v1.A.SL3-1
KH2012:KH.C8.342.v1.A.SL4-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000003215
NCBI Reference Sequence XM_002126481.4
Collections

Gateway full ORF

2 results

cien40832

Plate: VES76_G21

cien184206

Plate: VES98_D17

Gene collection 1 (N. Satoh)

2 results

cicl021n06

Plate: R1CiGC11c04

cieg005a11

Plate: R1CiGC16m21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
EF_hand_dom Pfam EF-hand domain
EF_hand_dom ProSiteProfiles EF-hand domain
EF_Hand_1_Ca_BS ProSitePatterns EF-Hand 1, calcium-binding site
EF-hand-dom_pair SUPERFAMILY EF-hand domain pair
EF_hand_dom CDD EF-hand domain
EF_hand_dom SMART EF-hand domain

GOSlim

40 results

GO Term Annotation Origin Type
actin binding Orthology molecular function
calcium ion binding Orthology molecular function
protein binding Orthology molecular function
intracellular Orthology cellular component
cytoplasm Orthology cellular component
cytosol Orthology cellular component
brain development Orthology biological process
tubulin binding Orthology molecular function
membrane Orthology cellular component
kinase binding Orthology molecular function
axon Orthology cellular component
identical protein binding Orthology molecular function
metal ion binding Orthology molecular function
extracellular exosome Orthology cellular component
response to organic substance Orthology biological process
ion transport Orthology biological process
transmembrane transport Orthology biological process
intracellular signal transduction Orthology biological process
membrane part Orthology cellular component
whole membrane Orthology cellular component
bounding membrane of organelle Orthology cellular component
macromolecular complex Orthology cellular component
cytoplasmic vesicle Orthology cellular component
Golgi apparatus part Orthology cellular component
phosphate-containing compound metabolic process Orthology biological process
regulation of catalytic activity Orthology biological process
positive regulation of hydrolase activity Orthology biological process
cell projection membrane Orthology cellular component
cell leading edge Orthology cellular component
neuron projection Orthology cellular component
neuronal cell body Orthology cellular component
plasma membrane part Orthology cellular component
cytoplasmic part Orthology cellular component
postsynapse Orthology cellular component
organelle Orthology cellular component
positive regulation of catalytic activity Orthology biological process
animal organ development Orthology biological process
protein targeting to membrane Orthology biological process
regulation of molecular function Orthology biological process
metal ion transport Orthology biological process

GO (Orthology)

36 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
actin binding Hs molecular function
calcium ion binding Hs molecular function
protein binding Hs molecular function
intracellular Hs cellular component
cytoplasm Hs cellular component
cytosol Hs cellular component
brain development Hs biological process
response to organic cyclic compound Hs biological process
ligand-gated ion channel activity Hs molecular function
tubulin binding Hs molecular function
membrane Hs cellular component
vesicle-mediated transport Hs biological process
calcium-mediated signaling Hs biological process
extrinsic component of membrane Hs cellular component
kinase binding Hs molecular function
clathrin coat of trans-Golgi network vesicle Hs cellular component
clathrin binding Hs molecular function
axon Hs cellular component
negative regulation of guanylate cyclase activity Hs biological process
activation of phospholipase D activity Hs biological process
dendrite membrane Hs cellular component
neuronal cell body membrane Hs cellular component
dendrite cytoplasm Hs cellular component
ion transmembrane transport Hs biological process
identical protein binding Hs molecular function
alpha-tubulin binding Hs molecular function
perikaryon Hs cellular component
dendritic spine head Hs cellular component
positive regulation of adenylate cyclase activity Hs biological process
metal ion binding Hs molecular function
inner ear development Hs biological process
retina development in camera-type eye Hs biological process
extracellular exosome Hs cellular component
cellular response to calcium ion Hs biological process
positive regulation of protein targeting to membrane Hs biological process
regulation of voltage-gated calcium channel activity Hs biological process

GO (Blast)

23 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
actin binding Hs molecular function 318 2.45e-112
calcium ion binding Hs molecular function 330 5.06e-117
protein binding Hs molecular function 330 5.06e-117
intracellular Hs cellular component 275 1.73e-95
cytoplasm Hs cellular component 318 2.45e-112
cytosol Hs cellular component 318 2.45e-112
ligand-gated ion channel activity Hs molecular function 275 1.73e-95
tubulin binding Hs molecular function 275 1.73e-95
membrane Hs cellular component 330 5.06e-117
extrinsic component of membrane Hs cellular component 318 2.45e-112
kinase binding Hs molecular function 318 2.45e-112
clathrin coat of trans-Golgi network vesicle Hs cellular component 275 1.73e-95
clathrin binding Hs molecular function 275 1.73e-95
axon Hs cellular component 318 2.45e-112
dendrite membrane Hs cellular component 318 2.45e-112
neuronal cell body membrane Hs cellular component 318 2.45e-112
dendrite cytoplasm Hs cellular component 318 2.45e-112
identical protein binding Hs molecular function 318 2.45e-112
alpha-tubulin binding Hs molecular function 275 1.73e-95
perikaryon Hs cellular component 318 2.45e-112
dendritic spine head Hs cellular component 318 2.45e-112
metal ion binding Hs molecular function 330 5.06e-117
extracellular exosome Hs cellular component 330 5.06e-117

GO (InterProScan)

1 result

GO Term Analysis Type e-value
calcium ion binding Pfam molecular function 1.9E-16

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