Aniseed - Gene card

Gene Card

Best human hits

TRMT1; TRMT1L

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009035

Gene Model ID

KH2012:KH.C8.404

Location

KhC8:4628565..4631297

Transcript Models and Sequences

KH2012:KH.C8.404.v1.A.nonSL10-1
KH2012:KH.C8.404.v1.A.nonSL12-1
KH2012:KH.C8.404.v1.A.nonSL13-1
KH2012:KH.C8.404.v1.A.nonSL3-1
KH2012:KH.C8.404.v1.A.nonSL4-1
KH2012:KH.C8.404.v1.A.nonSL5-1
KH2012:KH.C8.404.v1.A.nonSL7-1
KH2012:KH.C8.404.v1.A.nonSL9-1
KH2012:KH.C8.404.v1.A.SL1-1
KH2012:KH.C8.404.v1.A.SL11-1
KH2012:KH.C8.404.v1.A.SL2-1
KH2012:KH.C8.404.v1.A.SL6-1
KH2012:KH.C8.404.v1.A.SL8-1

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_004226290.3

Collections

Gateway full ORF

5 results

Gene collection 1 (N. Satoh)

1 result

cicl010k22

Plate: R1CiGC09j19

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
Trm1	ProSiteProfiles	tRNA methyltransferase, Trm1
SAM-dependent_MTases	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferase
Trm1	PANTHER	tRNA methyltransferase, Trm1
Trm1	Pfam	tRNA methyltransferase, Trm1

GOSlim

10 results

GO Term	Annotation Origin	Type
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Blast	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
mitochondrion	Blast	cellular component
transferase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
RNA processing	Orthology	biological process
metabolic process	Orthology	biological process

GO (Orthology)

11 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
tRNA binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
tRNA (guanine-N2-)-methyltransferase activity	Hs	molecular function
behavior	Hs	biological process
tRNA processing	Hs	biological process
methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
tRNA methylation	Hs	biological process
methylation	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)