Aniseed - Gene card

Gene Card

Best human hits

SLIT1; SLIT2; SLIT3

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009080

Gene Model ID

KH2012:KH.C8.445

Location

KhC8:3069932..3113847

Transcript Models and Sequences

KH2012:KH.C8.445.v1.A.ND2-1
KH2012:KH.C8.445.v2.A.SL1-1
KH2012:KH.C8.445.v2.A.SL3-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000005369

Collections

Gene collection 1 (N. Satoh)

2 results

citb4a18

Plate: R1CiGC29i07

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

25 results

IPR Term	Analysis	Definition
ConA-like_dom_sf	SUPERFAMILY	Concanavalin A-like lectin/glucanase domain superfamily
EGF-like_dom	SMART	EGF-like domain
Cys_knot_C	ProSitePatterns	Cystine knot, C-terminal
EGF-like_CS	ProSitePatterns	EGF-like, conserved site
EGF-like_dom	Pfam	EGF-like domain
EGF-like_dom	ProSiteProfiles	EGF-like domain
EGF-type_Asp/Asn_hydroxyl_site	ProSitePatterns	EGF-type aspartate/asparagine hydroxylation site
Laminin_G	ProSiteProfiles	Laminin G domain
Laminin_G	SMART	Laminin G domain
Cystine-knot_cytokine	SUPERFAMILY	Cystine-knot cytokine
EGF-like_Ca-bd_dom	SMART	EGF-like calcium-binding domain
TGF-b_C	ProSiteProfiles	Transforming growth factor-beta, C-terminal
Cys_knot_C	SMART	Cystine knot, C-terminal
Laminin_G	Pfam	Laminin G domain
EGF_Ca-bd_CS	ProSitePatterns	EGF-like calcium-binding, conserved site
Cys_knot_C	ProSiteProfiles	Cystine knot, C-terminal
EGF-like_CS	Pfam	EGF-like, conserved site
Leu-rich_rpt	ProSiteProfiles	Leucine-rich repeat
LRR_dom_sf	Gene3D	Leucine-rich repeat domain superfamily
LRRNT	Pfam	Leucine-rich repeat N-terminal domain
Cys-rich_flank_reg_C	SMART	Cysteine-rich flanking region, C-terminal
Leu-rich_rpt	Pfam	Leucine-rich repeat
Leu-rich_rpt_typical-subtyp	SMART	Leucine-rich repeat, typical subtype
LRRNT	SMART	Leucine-rich repeat N-terminal domain
Cys-rich_flank_reg_C	Pfam	Cysteine-rich flanking region, C-terminal

GOSlim

20 results

GO Term	Annotation Origin	Type
calcium ion binding	Blast	molecular function
protein binding	Blast	molecular function
extracellular region	Blast	cellular component
extracellular space	Blast	cellular component
intracellular	Blast	cellular component
cytoplasm	Blast	cellular component
mitochondrion	Blast	cellular component
plasma membrane	Blast	cellular component
membrane	Blast	cellular component
identical protein binding	Blast	molecular function
protein homodimerization activity	Blast	molecular function
extracellular exosome	Blast	cellular component
regulation of GTPase activity	Blast	biological process
GTPase regulator activity	Blast	molecular function
anion binding	Blast	molecular function
carbohydrate derivative binding	Blast	molecular function
receptor binding	Blast	molecular function
molecular function regulator	InterProScan	molecular function
regulation of signal transduction	InterProScan	biological process
signaling receptor activity	InterProScan	molecular function

GO (Orthology)