Aniseed - Gene card

Gene Card

Best human hits

SMYD1; SMYD3; SMYD5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009154

Gene Model ID

KH2012:KH.C8.512

Location

KhC8:1944318..1948071

Transcript Models and Sequences

KH2012:KH.C8.512.v1.A.SL2-2
KH2012:KH.C8.512.v2.A.SL2-2
KH2012:KH.C8.512.v3.A.ND1-1
KH2012:KH.C8.512.v4.A.SL2-2
KH2012:KH.C8.512.v5.A.SL2-2

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000024309
NCBI Reference Sequence	XM_002127132.3
NCBI Reference Sequence	XM_018813066.1

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cieg032b20

Plate: R1CiGC20d14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
SET_dom	ProSiteProfiles	SET domain
SET_dom	Pfam	SET domain
SET_dom	SMART	SET domain

GOSlim

15 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
DNA binding	Blast	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Orthology	molecular function
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
cytoplasm	Blast	cellular component
cytosol	Blast	cellular component
transferase activity	Orthology	molecular function
metal ion binding	Orthology	molecular function
metabolic process	Orthology	biological process
enzyme binding	Blast	molecular function
RNA polymerase II regulatory region sequence-specific DNA binding	Blast	molecular function
organelle organization	Blast	biological process
cellular protein modification process	Blast	biological process

GO (Orthology)

5 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein binding	Hs	molecular function
methyltransferase activity	Hs	molecular function
transferase activity	Hs	molecular function
methylation	Hs	biological process
metal ion binding	Hs	molecular function

GO (Blast)

14 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	62.4	1.28e-10
RNA polymerase II core binding	Hs	molecular function	62.4	1.28e-10
RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	Hs	molecular function	62.4	1.28e-10
DNA binding	Hs	molecular function	55.1	2.79e-08
transcription corepressor activity	Hs	molecular function	55.1	2.79e-08
protein binding	Hs	molecular function	368	9.51e-126
nucleus	Hs	cellular component	62.4	1.28e-10
nucleoplasm	Hs	cellular component	62.4	1.28e-10
cytoplasm	Hs	cellular component	62.4	1.28e-10
cytosol	Hs	cellular component	62.4	1.28e-10
methyltransferase activity	Hs	molecular function	368	9.51e-126
transferase activity	Hs	molecular function	368	9.51e-126
histone-lysine N-methyltransferase activity	Hs	molecular function	62.4	1.28e-10
metal ion binding	Hs	molecular function	368	9.51e-126

GO (InterProScan)