Aniseed - Gene card

Gene Card

Best human hits

CTCF; CTCFL; ZNF317

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009277

Gene Model ID

KH2012:KH.C8.626

Location

KhC8:2130274..2138880

Transcript Models and Sequences

KH2012:KH.C8.626.v1.A.nonSL3-1
KH2012:KH.C8.626.v1.A.SL1-1
KH2012:KH.C8.626.v1.A.SL4-1
KH2012:KH.C8.626.v1.R.ND2-1

External Database Gene Card

External database links

1 result

Database	Gene ID
ENSEMBL	ENSCING00000004507

Collections

Gateway full ORF

4 results

Gene collection 1 (N. Satoh)

3 results

cieg098i12

Plate: R1CiGC40j22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Znf_C2H2_type	ProSitePatterns	Zinc finger C2H2-type
Znf_C2H2_type	ProSiteProfiles	Zinc finger C2H2-type
Znf_C2H2_type	SMART	Zinc finger C2H2-type

GOSlim

20 results

GO Term	Annotation Origin	Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Blast	molecular function
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Blast	molecular function
nucleic acid binding	Blast	molecular function
DNA binding	Blast	molecular function
chromatin binding	Blast	molecular function
transcription factor activity, sequence-specific DNA binding	Blast	molecular function
transcription corepressor activity	Blast	molecular function
protein binding	Blast	molecular function
intracellular	Blast	cellular component
nucleus	Blast	cellular component
nucleoplasm	Blast	cellular component
nucleolus	Blast	cellular component
cytoplasm	Blast	cellular component
zinc ion binding	Blast	molecular function
sequence-specific DNA binding	Blast	molecular function
transcription regulatory region DNA binding	Blast	molecular function
metal ion binding	Blast	molecular function
intracellular organelle part	Blast	cellular component
intracellular non-membrane-bounded organelle	Blast	cellular component

GO (Orthology)

No result

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type

GO (Blast)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
chromosome, centromeric region	Hs	cellular component	54.7	3.62e-07
condensed chromosome	Hs	cellular component	54.7	3.62e-07
RNA polymerase II core promoter proximal region sequence-specific DNA binding	Hs	molecular function	54.7	3.62e-07
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	54.7	3.62e-07
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	47.4	5.31e-05
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding	Hs	molecular function	54.7	3.62e-07
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	Hs	molecular function	54.7	3.62e-07
nucleic acid binding	Hs	molecular function	54.7	3.62e-07
DNA binding	Hs	molecular function	54.7	3.62e-07
chromatin binding	Hs	molecular function	54.7	3.62e-07
transcription factor activity, sequence-specific DNA binding	Hs	molecular function	54.7	3.62e-07
transcription corepressor activity	Hs	molecular function	54.7	3.62e-07
protein binding	Hs	molecular function	54.7	3.62e-07
intracellular	Hs	cellular component	52.0	1.94e-06
nucleus	Hs	cellular component	54.7	3.62e-07
nucleoplasm	Hs	cellular component	54.7	3.62e-07
chromosome	Hs	cellular component	54.7	3.62e-07
nucleolus	Hs	cellular component	54.7	3.62e-07
cytoplasm	Hs	cellular component	47.4	5.31e-05
zinc ion binding	Hs	molecular function	54.7	3.62e-07
histone binding	Hs	molecular function	47.4	5.31e-05
chromatin insulator sequence binding	Hs	molecular function	54.7	3.62e-07
sequence-specific DNA binding	Hs	molecular function	54.7	3.62e-07
transcription regulatory region DNA binding	Hs	molecular function	54.7	3.62e-07
metal ion binding	Hs	molecular function	54.7	3.62e-07

GO (InterProScan)