Aniseed - Gene card

Gene Card

Best human hits

SNRNP40; WDR5; WDR5B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009293

Gene Model ID

KH2012:KH.C8.640

Location

KhC8:3505627..3508065

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000006509
NCBI Reference Sequence	XM_018812896.1

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

2 results

cieg005j23

Plate: R1CiGC16c08

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term	Analysis	Definition
WD40_repeat	ProSiteProfiles	WD40 repeat
WD40/YVTN_repeat-like_dom_sf	Gene3D	WD40/YVTN repeat-like-containing domain superfamily
WD40_repeat_CS	ProSitePatterns	WD40 repeat, conserved site
WD40_repeat_dom	ProSiteProfiles	WD40-repeat-containing domain
WD40_repeat	SMART	WD40 repeat
G-protein_beta_WD-40_rep	PRINTS	G-protein beta WD-40 repeat
WD40_repeat_dom_sf	SUPERFAMILY	WD40-repeat-containing domain superfamily
WD40_repeat	Pfam	WD40 repeat

GOSlim

23 results

GO Term	Annotation Origin	Type
RNA splicing, via transesterification reactions	Orthology	biological process
mRNA splicing, via spliceosome	Orthology	biological process
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Blast	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
RNA processing	Orthology	biological process
mRNA processing	Orthology	biological process
RNA splicing	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
nuclear speck	Orthology	cellular component
nuclear part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
nucleoplasm part	Blast	cellular component
organelle organization	Blast	biological process
transferase activity	Blast	molecular function
cellular protein modification process	Blast	biological process
cell projection part	Blast	cellular component
plasma membrane region	Blast	cellular component
microtubule organizing center	Blast	cellular component

GO (Orthology)

19 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
RNA splicing, via transesterification reactions	Hs	biological process
mRNA splicing, via spliceosome	Hs	biological process
RNA binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
spliceosomal complex	Hs	cellular component
U5 snRNP	Hs	cellular component
small nucleolar ribonucleoprotein complex	Hs	cellular component
cytosol	Hs	cellular component
RNA processing	Hs	biological process
mRNA processing	Hs	biological process
RNA splicing	Hs	biological process
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
nuclear speck	Hs	cellular component
U2-type catalytic step 2 spliceosome	Hs	cellular component
precatalytic spliceosome	Hs	cellular component
catalytic step 2 spliceosome	Hs	cellular component

GO (Blast)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
histone acetyltransferase complex	Hs	cellular component	144	3.69e-40
RNA binding	Hs	molecular function	445	1.67e-157
protein binding	Hs	molecular function	445	1.67e-157
intracellular	Hs	cellular component	144	3.69e-40
nucleus	Hs	cellular component	445	1.67e-157
nucleoplasm	Hs	cellular component	445	1.67e-157
Ada2/Gcn5/Ada3 transcription activator complex	Hs	cellular component	144	3.69e-40
spliceosomal complex	Hs	cellular component	445	1.67e-157
U5 snRNP	Hs	cellular component	445	1.67e-157
small nucleolar ribonucleoprotein complex	Hs	cellular component	445	1.67e-157
cytosol	Hs	cellular component	445	1.67e-157
membrane	Hs	cellular component	445	1.67e-157
integral component of membrane	Hs	cellular component	445	1.67e-157
nuclear speck	Hs	cellular component	445	1.67e-157
histone-lysine N-methyltransferase activity	Hs	molecular function	144	3.69e-40
methylated histone binding	Hs	molecular function	144	3.69e-40
histone methyltransferase complex	Hs	cellular component	144	3.69e-40
ciliary basal body	Hs	cellular component	144	3.69e-40
histone methyltransferase activity (H3-K4 specific)	Hs	molecular function	144	3.69e-40
histone acetyltransferase activity (H4-K5 specific)	Hs	molecular function	144	3.69e-40
histone acetyltransferase activity (H4-K8 specific)	Hs	molecular function	144	3.69e-40
MLL3/4 complex	Hs	cellular component	144	3.69e-40
histone acetyltransferase activity (H4-K16 specific)	Hs	molecular function	144	3.69e-40
Set1C/COMPASS complex	Hs	cellular component	144	3.69e-40
U2-type catalytic step 2 spliceosome	Hs	cellular component	445	1.67e-157
precatalytic spliceosome	Hs	cellular component	445	1.67e-157
catalytic step 2 spliceosome	Hs	cellular component	445	1.67e-157
MLL1 complex	Hs	cellular component	144	3.69e-40

GO (InterProScan)

1 result

GO Term	Analysis	Type	e-value
protein binding	Gene3D	molecular function	3.1E-99