Aniseed - Gene card

Gene Card

Best human hits

ACTA1; ACTA2; ACTC1

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009302

Gene Model ID

KH2012:KH.C8.649

Location

KhC8:1926477..1929411

Transcript Models and Sequences

KH2012:KH.C8.649.v1.A.ND1-1
KH2012:KH.C8.649.v1.A.nonSL2-1
KH2012:KH.C8.649.v1.A.nonSL3-1
KH2012:KH.C8.649.v1.A.nonSL4-1
KH2012:KH.C8.649.v1.A.nonSL5-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000007550
NCBI Reference Sequence	XM_002127468.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad013d07

Plate: R1CiGC02g18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term	Analysis	Definition
Actin	SMART	Actin family
Actin	Pfam	Actin family
Actin	PANTHER	Actin family
Actin	PRINTS	Actin family
Actin_CS	ProSitePatterns	Actin, conserved site
Actin/actin-like_CS	ProSitePatterns	Actin/actin-like conserved site

GOSlim

31 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
extracellular space	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
cytoskeleton	Orthology	cellular component
focal adhesion	Blast	cellular component
positive regulation of gene expression	Orthology	biological process
membrane	Blast	cellular component
protein kinase binding	Blast	molecular function
lamellipodium	Orthology	cellular component
macromolecular complex	Blast	cellular component
cell body	Orthology	cellular component
extracellular exosome	Orthology	cellular component
cytoskeletal part	Orthology	cellular component
organelle organization	Orthology	biological process
structural molecule activity	Orthology	molecular function
cytoplasmic part	Orthology	cellular component
cytoskeletal protein binding	Orthology	molecular function
organelle part	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
plasma membrane region	Orthology	cellular component
cell projection	Orthology	cellular component
cell development	Orthology	biological process
anion binding	Orthology	molecular function
adenyl ribonucleotide binding	Orthology	molecular function
response to lipid	Orthology	biological process
animal organ development	Orthology	biological process
anatomical structure morphogenesis	Orthology	biological process
nucleoside-triphosphatase activity	Blast	molecular function

GO (Orthology)

28 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
stress fiber	Hs	cellular component
structural constituent of cytoskeleton	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
extracellular space	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
cytoskeleton	Hs	cellular component
striated muscle thin filament	Hs	cellular component
actin filament	Hs	cellular component
muscle contraction	Hs	biological process
response to mechanical stimulus	Hs	biological process
response to lithium ion	Hs	biological process
positive regulation of gene expression	Hs	biological process
actin cytoskeleton	Hs	cellular component
myosin binding	Hs	molecular function
sarcomere	Hs	cellular component
lamellipodium	Hs	cellular component
filopodium	Hs	cellular component
skeletal muscle thin filament assembly	Hs	biological process
ADP binding	Hs	molecular function
cell body	Hs	cellular component
response to steroid hormone	Hs	biological process
skeletal muscle fiber development	Hs	biological process
extracellular exosome	Hs	cellular component
blood microparticle	Hs	cellular component
mesenchyme migration	Hs	biological process

GO (Blast)