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GENE CARD

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Gene Card

Best human hits

SNX2; SNX30; SNX7

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009397

Gene Model ID

KH2012:KH.C8.734

Location

KhC8:2963943..2970494

Transcript Models and Sequences

  KH2012:KH.C8.734.v1.A.ND1-1
KH2012:KH.C8.734.v1.A.nonSL2-1
KH2012:KH.C8.734.v1.A.SL3-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000005461
ENSEMBL ENSCING00000022828
Collections

Gateway full ORF

2 results

cien152094

Plate: VES93_J23

cien156126

Plate: VES94_E11

Gene collection 1 (N. Satoh)

2 results

cieg022j17

Plate: R1CiGC19c07

cieg046a23

Plate: R1CiGC22p20

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

8 results

IPR Term Analysis Definition
Phox Pfam Phox homologous domain
PX_dom_sf SUPERFAMILY PX domain superfamily
Phox SMART Phox homologous domain
AH/BAR_dom_sf SUPERFAMILY AH/BAR domain superfamily
AH/BAR_dom_sf Gene3D AH/BAR domain superfamily
Vps5_C Pfam Sorting nexin Vps5-like, C-terminal
PX_dom_sf Gene3D PX domain superfamily
Phox ProSiteProfiles Phox homologous domain

GOSlim

29 results

GO Term Annotation Origin Type
protein binding Orthology molecular function
intracellular Blast cellular component
cytoplasm Orthology cellular component
lysosome Blast cellular component
endosome Orthology cellular component
cytosol Blast cellular component
protein transport Orthology biological process
membrane Orthology cellular component
lamellipodium Blast cellular component
cytoplasmic vesicle Orthology cellular component
macromolecular complex Blast cellular component
protein homodimerization activity Blast molecular function
cell projection Blast cellular component
protein heterodimerization activity Blast molecular function
extracellular exosome Blast cellular component
membrane organization Orthology biological process
organelle organization Orthology biological process
binding Orthology molecular function
membrane part Orthology cellular component
intracellular organelle part Orthology cellular component
organelle membrane Orthology cellular component
anion binding Orthology molecular function
receptor binding Blast molecular function
macromolecular complex binding Blast molecular function
whole membrane Blast cellular component
bounding membrane of organelle Blast cellular component
endomembrane system Blast cellular component
early endosome Blast cellular component
cell adhesion molecule binding Blast molecular function

GO (Orthology)

12 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
protein binding Hs molecular function
cytoplasm Hs cellular component
endosome Hs cellular component
endocytosis Hs biological process
lipid binding Hs molecular function
protein transport Hs biological process
membrane Hs cellular component
vesicle organization Hs biological process
extrinsic component of membrane Hs cellular component
cytoplasmic vesicle membrane Hs cellular component
cytoplasmic vesicle Hs cellular component
phosphatidylinositol binding Hs molecular function

GO (Blast)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
epidermal growth factor receptor binding Hs molecular function 122 4.73e-30
insulin receptor binding Hs molecular function 122 4.73e-30
protein binding Hs molecular function 318 8.36e-105
intracellular Hs cellular component 122 4.73e-30
cytoplasm Hs cellular component 318 8.36e-105
lysosome Hs cellular component 122 4.73e-30
endosome Hs cellular component 318 8.36e-105
cytosol Hs cellular component 122 4.73e-30
lipid binding Hs molecular function 308 1.21e-100
endosome membrane Hs cellular component 122 4.73e-30
membrane Hs cellular component 308 1.21e-100
extrinsic component of membrane Hs cellular component 318 8.36e-105
lamellipodium Hs cellular component 122 4.73e-30
cytoplasmic vesicle membrane Hs cellular component 308 1.21e-100
retromer complex Hs cellular component 122 4.73e-30
retromer, tubulation complex Hs cellular component 122 4.73e-30
cytoplasmic vesicle Hs cellular component 308 1.21e-100
early endosome membrane Hs cellular component 122 4.73e-30
macromolecular complex Hs cellular component 122 4.73e-30
phosphatidylinositol binding Hs molecular function 318 8.36e-105
protein homodimerization activity Hs molecular function 122 4.73e-30
cell projection Hs cellular component 122 4.73e-30
cadherin binding Hs molecular function 122 4.73e-30
protein heterodimerization activity Hs molecular function 122 4.73e-30
extracellular exosome Hs cellular component 122 4.73e-30
transferrin receptor binding Hs molecular function 122 4.73e-30
leptin receptor binding Hs molecular function 122 4.73e-30

GO (InterProScan)

1 result

GO Term Analysis Type e-value
phosphatidylinositol binding Gene3D molecular function 3.2E-37

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