Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000023884
NCBI Reference Sequence	XM_004226279.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

ciad046m05

Plate: R1CiGC05c07

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term	Analysis	Definition
CSP_DNA-bd	Pfam	Cold-shock protein, DNA-binding
CSD	SMART	Cold shock domain
NA-bd_OB-fold	SUPERFAMILY	Nucleic acid-binding, OB-fold
CSP_DNA-bd	CDD	Cold-shock protein, DNA-binding

GOSlim

19 results

GO Term	Annotation Origin	Type
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
DNA binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
nucleus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
regulation of transcription, DNA-templated	Orthology	biological process
regulation of transcription from RNA polymerase II promoter	Orthology	biological process
mRNA processing	Orthology	biological process
transcription factor binding	Orthology	molecular function
intracellular signal transduction	Orthology	biological process
extracellular exosome	Orthology	cellular component
cytoplasmic part	Orthology	cellular component
macromolecular complex	Orthology	cellular component
intracellular non-membrane-bounded organelle	Orthology	cellular component
enzyme binding	Orthology	molecular function
mRNA catabolic process	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
cytoplasmic exosome (RNase complex)	Hs	cellular component
P-body	Hs	cellular component
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function
nucleic acid binding	Hs	molecular function
DNA binding	Hs	molecular function
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
protein binding	Hs	molecular function
nucleus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
regulation of transcription, DNA-templated	Hs	biological process
regulation of transcription from RNA polymerase II promoter	Hs	biological process
mRNA processing	Hs	biological process
transcription factor binding	Hs	molecular function
phosphatase binding	Hs	molecular function
intracellular signal transduction	Hs	biological process
P granule	Hs	cellular component
regulation of mRNA stability	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

15 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
cytoplasmic exosome (RNase complex)	Hs	cellular component	124	8.43e-37
P-body	Hs	cellular component	124	8.43e-37
RNA polymerase II transcription factor activity, sequence-specific DNA binding	Hs	molecular function	124	8.43e-37
nucleic acid binding	Hs	molecular function	124	8.43e-37
DNA binding	Hs	molecular function	124	8.43e-37
RNA binding	Hs	molecular function	124	8.43e-37
mRNA 3'-UTR binding	Hs	molecular function	124	8.43e-37
protein binding	Hs	molecular function	124	8.43e-37
nucleus	Hs	cellular component	120	1.81e-35
cytoplasm	Hs	cellular component	124	8.43e-37
cytosol	Hs	cellular component	124	8.43e-37
transcription factor binding	Hs	molecular function	120	1.81e-35
phosphatase binding	Hs	molecular function	124	8.43e-37
P granule	Hs	cellular component	124	8.43e-37
extracellular exosome	Hs	cellular component	124	8.43e-37

GO (InterProScan)

3 results

GO Term	Analysis	Type	e-value
nucleic acid binding	SMART	molecular function	4.1E-6
DNA binding	CDD	molecular function	3.72164E-13
regulation of transcription, DNA-templated	CDD	biological process	3.72164E-13

Gene Card

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