Aniseed - Gene card

Gene Card

Best human hits

MARCH1; MARCH11; MARCH5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009610

Gene Model ID

KH2012:KH.C8.97

Location

KhC8:966355..968969

Transcript Models and Sequences

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000008004
NCBI Reference Sequence	XM_002131871.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv042b16

Plate: R1CiGC28o18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
MARCH-like	PANTHER	E3 ubiquitin-protein ligase MARCH-like
Znf_RING-CH	ProSiteProfiles	Zinc finger, RING-CH-type
Znf_RING-CH	Pfam	Zinc finger, RING-CH-type
Znf_RING/FYVE/PHD	Gene3D	Zinc finger, RING/FYVE/PHD-type
Znf_RING-CH	SMART	Zinc finger, RING-CH-type

GOSlim

28 results

GO Term	Annotation Origin	Type
protein polyubiquitination	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
protein binding	Orthology	molecular function
mitochondrion	Orthology	cellular component
lysosome	Blast	cellular component
lysosomal membrane	Blast	cellular component
endosome	Blast	cellular component
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
Golgi apparatus	Blast	cellular component
plasma membrane	Blast	cellular component
zinc ion binding	Orthology	molecular function
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
protein ubiquitination	Orthology	biological process
transferase activity	Orthology	molecular function
cytoplasmic vesicle	Blast	cellular component
metal ion binding	Orthology	molecular function
whole membrane	Orthology	cellular component
mitochondrial membrane	Orthology	cellular component
bounding membrane of organelle	Orthology	cellular component
enzyme binding	Orthology	molecular function
anatomical structure morphogenesis	Orthology	biological process
intracellular organelle part	Blast	cellular component
organelle membrane	Blast	cellular component
early endosome	Blast	cellular component
Golgi membrane	Blast	cellular component
receptor binding	Blast	molecular function

GO (Orthology)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein polyubiquitination	Hs	biological process
ubiquitin-protein transferase activity	Hs	molecular function
protein binding	Hs	molecular function
mitochondrion	Hs	cellular component
mitochondrial outer membrane	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
zinc ion binding	Hs	molecular function
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
protein ubiquitination	Hs	biological process
transferase activity	Hs	molecular function
metal ion binding	Hs	molecular function
GTPase binding	Hs	molecular function
protein autoubiquitination	Hs	biological process
regulation of mitochondrial fission	Hs	biological process
positive regulation of mitochondrial fission	Hs	biological process
negative regulation of cell aging	Hs	biological process

GO (Blast)

24 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
ubiquitin-protein transferase activity	Hs	molecular function	353	2.71e-123
protein binding	Hs	molecular function	353	2.71e-123
mitochondrion	Hs	cellular component	353	2.71e-123
mitochondrial outer membrane	Hs	cellular component	353	2.71e-123
lysosome	Hs	cellular component	43.9	8.96e-05
lysosomal membrane	Hs	cellular component	43.9	8.96e-05
endosome	Hs	cellular component	43.9	8.96e-05
endoplasmic reticulum	Hs	cellular component	353	2.71e-123
endoplasmic reticulum membrane	Hs	cellular component	353	2.71e-123
Golgi apparatus	Hs	cellular component	43.9	8.96e-05
plasma membrane	Hs	cellular component	43.9	8.96e-05
zinc ion binding	Hs	molecular function	353	2.71e-123
membrane	Hs	cellular component	353	2.71e-123
integral component of membrane	Hs	cellular component	353	2.71e-123
transferase activity	Hs	molecular function	353	2.71e-123
cytoplasmic vesicle membrane	Hs	cellular component	43.9	8.96e-05
cytoplasmic vesicle	Hs	cellular component	43.9	8.96e-05
early endosome membrane	Hs	cellular component	43.9	8.96e-05
late endosome membrane	Hs	cellular component	43.9	8.96e-05
trans-Golgi network membrane	Hs	cellular component	43.9	8.96e-05
MHC protein binding	Hs	molecular function	43.9	8.96e-05
metal ion binding	Hs	molecular function	353	2.71e-123
GTPase binding	Hs	molecular function	353	2.71e-123
ubiquitin protein ligase activity	Hs	molecular function	43.9	8.96e-05

GO (InterProScan)