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  5. Gene 'KH2012:KH.C9.10'

Gene Card

Best human hits

PRPF38A; PRPF38B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009614

Gene Model ID

KH2012:KH.C9.10

Location

KhC9:4984710..4988887

Transcript Models and Sequences

  KH2012:KH.C9.10.v10.A.SL2-2
KH2012:KH.C9.10.v11.A.SL1-2
KH2012:KH.C9.10.v1.A.SL1-1
KH2012:KH.C9.10.v2.A.ND4-1
KH2012:KH.C9.10.v3.A.ND5-1
KH2012:KH.C9.10.v3.A.SL1-1
KH2012:KH.C9.10.v4.A.SL1-1
KH2012:KH.C9.10.v5.A.SL2-1
KH2012:KH.C9.10.v6.A.ND3-1
KH2012:KH.C9.10.v6.A.SL1-1
KH2012:KH.C9.10.v7.A.SL2-1
KH2012:KH.C9.10.v8.A.SL2-1
KH2012:KH.C9.10.v9.A.SL2-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000020944
NCBI Reference Sequence XM_002131963.4
NCBI Reference Sequence XM_009861437.2
NCBI Reference Sequence XM_018813413.1
Collections

Gateway full ORF

2 results

cima8111719

Plate: VES74_B04

cien147306

Plate: VES93_D07

Gene collection 1 (N. Satoh)

1 result

cieg002p09

Plate: R1CiGC15d18

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

2 results

IPR Term Analysis Definition
PRP38 PANTHER Pre-mRNA-splicing factor 38
PRP38 Pfam Pre-mRNA-splicing factor 38

GOSlim

9 results

GO Term Annotation Origin Type
RNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Blast cellular component
mRNA processing Orthology biological process
RNA splicing Orthology biological process
nuclear membrane Blast cellular component
nuclear part Orthology cellular component
macromolecular complex Orthology cellular component

GO (Orthology)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
spliceosomal complex Hs cellular component
mRNA processing Hs biological process
RNA splicing Hs biological process
precatalytic spliceosome Hs cellular component

GO (Blast)

7 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 266 3.48e-84
protein binding Hs molecular function 266 3.48e-84
nucleus Hs cellular component 266 3.48e-84
nucleoplasm Hs cellular component 40.4 0.001
spliceosomal complex Hs cellular component 266 3.48e-84
nuclear membrane Hs cellular component 40.4 0.001
precatalytic spliceosome Hs cellular component 266 3.48e-84

GO (InterProScan)

No result

GO Term Analysis Type e-value

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