Aniseed - Gene card

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000003502
NCBI Reference Sequence	XM_002130497.3

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cicl009n15

Plate: R1CiGC09b11

WashU Genome Browser

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Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
Helicase_C	SMART	Helicase, C-terminal
Helicase_C	CDD	Helicase, C-terminal
Helicase_ATP-bd	SMART	Helicase superfamily 1/2, ATP-binding domain
RBD_domain_sf	SUPERFAMILY	RNA-binding domain superfamily
GUCT	Pfam	GUCT
Helicase_C	Pfam	Helicase, C-terminal
DEAD/DEAH_box_helicase_dom	Pfam	DEAD/DEAH box helicase domain
P-loop_NTPase	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolase
Helicase_C	ProSiteProfiles	Helicase, C-terminal
Helicase_ATP-bd	ProSiteProfiles	Helicase superfamily 1/2, ATP-binding domain

GOSlim

21 results

GO Term	Annotation Origin	Type
nucleotide binding	Orthology	molecular function
nucleic acid binding	Orthology	molecular function
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
ATP binding	Orthology	molecular function
intracellular	Blast	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
plasma membrane	Orthology	cellular component
transcription, DNA-templated	Orthology	biological process
transcription from RNA polymerase II promoter	Orthology	biological process
membrane	Orthology	cellular component
hydrolase activity	Orthology	molecular function
cell differentiation	Orthology	biological process
nucleoside-triphosphatase activity	Orthology	molecular function
RNA processing	Orthology	biological process
RNA metabolic process	Orthology	biological process
response to organic substance	Orthology	biological process
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

27 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nucleotide binding	Hs	molecular function
osteoblast differentiation	Hs	biological process
nucleic acid binding	Hs	molecular function
RNA binding	Hs	molecular function
double-stranded RNA binding	Hs	molecular function
ATP-dependent RNA helicase activity	Hs	molecular function
helicase activity	Hs	molecular function
protein binding	Hs	molecular function
ATP binding	Hs	molecular function
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
plasma membrane	Hs	cellular component
transcription, DNA-templated	Hs	biological process
rRNA processing	Hs	biological process
transcription from RNA polymerase II promoter	Hs	biological process
response to virus	Hs	biological process
RNA secondary structure unwinding	Hs	biological process
membrane	Hs	cellular component
hydrolase activity	Hs	molecular function
rRNA binding	Hs	molecular function
snoRNA binding	Hs	molecular function
miRNA binding	Hs	molecular function
response to exogenous dsRNA	Hs	biological process
positive regulation of gene expression, epigenetic	Hs	biological process
7SK snRNA binding	Hs	molecular function

GO (Blast)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
nucleotide binding	Hs	molecular function	594	0.0
nucleic acid binding	Hs	molecular function	594	0.0
RNA binding	Hs	molecular function	594	0.0
double-stranded RNA binding	Hs	molecular function	594	0.0
ATP-dependent RNA helicase activity	Hs	molecular function	594	0.0
helicase activity	Hs	molecular function	594	0.0
protein binding	Hs	molecular function	594	0.0
ATP binding	Hs	molecular function	594	0.0
intracellular	Hs	cellular component	208	1.43e-58
nucleus	Hs	cellular component	594	0.0
nucleoplasm	Hs	cellular component	594	0.0
nucleolus	Hs	cellular component	594	0.0
cytoplasm	Hs	cellular component	594	0.0
plasma membrane	Hs	cellular component	546	0.0
membrane	Hs	cellular component	594	0.0
hydrolase activity	Hs	molecular function	594	0.0
rRNA binding	Hs	molecular function	594	0.0
snoRNA binding	Hs	molecular function	594	0.0
miRNA binding	Hs	molecular function	594	0.0
7SK snRNA binding	Hs	molecular function	594	0.0

GO (InterProScan)

5 results

GO Term	Analysis	Type	e-value
nucleic acid binding	Pfam	molecular function	4.0E-44
RNA binding	Pfam	molecular function	4.1E-26
helicase activity	Pfam	molecular function	4.1E-26
ATP binding	Pfam	molecular function	4.0E-44
nucleus	Pfam	cellular component	4.1E-26

Gene Card

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Transcript Models and Sequences