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Gene Card

Best human hits

BRF1; BRF2; GTF2B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009702

Gene Model ID

KH2012:KH.C9.180

Location

KhC9:5518174..5521872

Transcript Models and Sequences

  KH2012:KH.C9.180.v1.A.ND3-1
KH2012:KH.C9.180.v1.A.nonSL4-1
KH2012:KH.C9.180.v1.A.nonSL6-1
KH2012:KH.C9.180.v1.A.SL1-1
KH2012:KH.C9.180.v1.A.SL5-1
KH2012:KH.C9.180.v2.A.SL5-1
KH2012:KH.C9.180.v2.R.ND2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000009619
NCBI Reference Sequence XM_002129381.4
Collections

Gateway full ORF

2 results

cima894977

Plate: VES71_G15

cien126630

Plate: VES90_I02

Gene collection 1 (N. Satoh)

2 results

cieg001a02

Plate: R1CiGC15m08

cieg057a17

Plate: R1CiGC24n17

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

9 results

IPR Term Analysis Definition
TFIIB_CS ProSitePatterns Transcription factor TFIIB, conserved site
TFIIB_cyclin Pfam Transcription factor TFIIB, cyclin-like domain
Cyclin-like SMART Cyclin-like
Znf_TFIIB ProSiteProfiles Zinc finger, TFIIB-type
TFIIB PANTHER Transcription factor TFIIB
Cyclin-like CDD Cyclin-like
Znf_TFIIB Pfam Zinc finger, TFIIB-type
Cyclin-like_sf SUPERFAMILY Cyclin-like superfamily
TFIIB PRINTS Transcription factor TFIIB

GOSlim

27 results

GO Term Annotation Origin Type
DNA binding Orthology molecular function
protein binding Orthology molecular function
nucleus Orthology cellular component
nucleoplasm Orthology cellular component
transcription, DNA-templated Orthology biological process
regulation of transcription, DNA-templated Orthology biological process
transcription from RNA polymerase II promoter Orthology biological process
transcription initiation from RNA polymerase II promoter Orthology biological process
translational initiation Blast biological process
transcription factor binding Orthology molecular function
nuclear body Orthology cellular component
metal ion binding Orthology molecular function
RNA polymerase II regulatory region sequence-specific DNA binding Orthology molecular function
enzyme binding Orthology molecular function
nucleoplasm part Orthology cellular component
macromolecular complex Orthology cellular component
intracellular non-membrane-bounded organelle Orthology cellular component
cellular protein modification process Orthology biological process
transferase activity Orthology molecular function
receptor binding Orthology molecular function
positive regulation of transcription from RNA polymerase II promoter Orthology biological process
DNA-templated transcription, initiation Orthology biological process
chromatin binding Orthology molecular function
nuclear part Blast cellular component
transcription regulatory region DNA binding Blast molecular function
RNA binding Blast molecular function
regulation of gene expression Blast biological process

GO (Orthology)

27 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function
RNA polymerase II core binding Hs molecular function
DNA binding Hs molecular function
protein binding Hs molecular function
nucleus Hs cellular component
nucleoplasm Hs cellular component
transcription factor TFIID complex Hs cellular component
chromosome Hs cellular component
transcription, DNA-templated Hs biological process
regulation of transcription, DNA-templated Hs biological process
transcription from RNA polymerase II promoter Hs biological process
transcription initiation from RNA polymerase II promoter Hs biological process
transcription elongation from RNA polymerase II promoter Hs biological process
protein acetylation Hs biological process
transcription factor binding Hs molecular function
viral process Hs biological process
acetyltransferase activity Hs molecular function
nuclear body Hs cellular component
TBP-class protein binding Hs molecular function
snRNA transcription from RNA polymerase II promoter Hs biological process
metal ion binding Hs molecular function
thyroid hormone receptor binding Hs molecular function
RNA polymerase II transcriptional preinitiation complex assembly Hs biological process
positive regulation of transcription initiation from RNA polymerase II promoter Hs biological process
DNA-templated transcriptional preinitiation complex assembly Hs biological process
transcriptional preinitiation complex Hs cellular component
promoter-specific chromatin binding Hs molecular function

GO (Blast)

21 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transcription factor TFIIIB complex Hs cellular component 72.8 4.18e-14
RNA polymerase II core promoter sequence-specific DNA binding Hs molecular function 477 2.32e-171
RNA polymerase II core binding Hs molecular function 477 2.32e-171
transcription factor activity, RNA polymerase III transcription factor binding Hs molecular function 64.3 1.98e-11
TFIIIB-type transcription factor activity Hs molecular function 72.8 4.18e-14
RNA polymerase III type 3 promoter DNA binding Hs molecular function 64.3 1.98e-11
DNA binding Hs molecular function 477 2.32e-171
translation initiation factor activity Hs molecular function 72.8 4.18e-14
protein binding Hs molecular function 477 2.32e-171
nucleus Hs cellular component 477 2.32e-171
nucleoplasm Hs cellular component 477 2.32e-171
transcription factor TFIID complex Hs cellular component 477 2.32e-171
chromosome Hs cellular component 477 2.32e-171
transcription factor binding Hs molecular function 477 2.32e-171
acetyltransferase activity Hs molecular function 477 2.32e-171
nuclear body Hs cellular component 477 2.32e-171
TBP-class protein binding Hs molecular function 477 2.32e-171
metal ion binding Hs molecular function 477 2.32e-171
thyroid hormone receptor binding Hs molecular function 477 2.32e-171
transcriptional preinitiation complex Hs cellular component 477 2.32e-171
promoter-specific chromatin binding Hs molecular function 477 2.32e-171

GO (InterProScan)

3 results

GO Term Analysis Type e-value
regulation of transcription, DNA-templated PANTHER biological process 1.3E-101
TBP-class protein binding Pfam molecular function 1.1E-25
DNA-templated transcriptional preinitiation complex assembly PANTHER biological process 1.3E-101

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