Gene Card
Best human hits
RBM41; RNPC3; SNRPA
Unique Gene ID
Cirobu.g00009837
Gene Model ID
KH2012:KH.C9.303
Location
KhC9:310846..312577
Transcript Models and Sequences
External database links
2 results
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000021276 |
| NCBI Reference Sequence | XM_002121893.4 |
Gateway full ORF
2 results
cien170605
Plate: VES96_C17
cien206149
Plate: VES102_K07
Gene collection 1 (N. Satoh)
1 result
cieg020d20
Plate: R1CiGC18n01
n/a
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Click here to see the tree inference method
InterPro
6 results
| IPR Term | Analysis | Definition |
|---|---|---|
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| RRM_dom | SMART | RNA recognition motif domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| RRM_dom | ProSiteProfiles | RNA recognition motif domain |
| RBM40_RRM1 | CDD | RBM40, RNA recognition motif 1 |
| RRM_dom | Pfam | RNA recognition motif domain |
GOSlim
13 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| developmental process | Orthology | biological process |
| identical protein binding | Blast | molecular function |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| macromolecular complex binding | Blast | molecular function |
GO (Orthology)
13 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| U12-type spliceosomal complex | Hs | cellular component |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| U12 snRNA binding | Hs | molecular function |
| developmental process | Hs | biological process |
| pre-mRNA intronic binding | Hs | molecular function |
GO (Blast)
15 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 264 | 1.51e-82 |
| RNA binding | Hs | molecular function | 264 | 1.51e-82 |
| protein binding | Hs | molecular function | 264 | 1.51e-82 |
| nucleus | Hs | cellular component | 264 | 1.51e-82 |
| nucleoplasm | Hs | cellular component | 264 | 1.51e-82 |
| spliceosomal complex | Hs | cellular component | 264 | 1.51e-82 |
| U1 snRNP | Hs | cellular component | 49.3 | 2.12e-06 |
| U12-type spliceosomal complex | Hs | cellular component | 264 | 1.51e-82 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 49.3 | 2.12e-06 |
| U1 snRNA binding | Hs | molecular function | 49.3 | 2.12e-06 |
| U12 snRNA binding | Hs | molecular function | 264 | 1.51e-82 |
| snRNA stem-loop binding | Hs | molecular function | 49.3 | 2.12e-06 |
| identical protein binding | Hs | molecular function | 49.3 | 2.12e-06 |
| pre-mRNA intronic binding | Hs | molecular function | 264 | 1.51e-82 |
| U1 snRNP binding | Hs | molecular function | 49.3 | 2.12e-06 |
GO (InterProScan)
2 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SUPERFAMILY | molecular function | 2.01E-18 |
| protein binding | CDD | molecular function | 9.14626E-34 |
