Aniseed - Gene card

Gene Card

Best human hits

SEC61B

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009851

Gene Model ID

KH2012:KH.C9.317

Location

KhC9:1323520..1332927

Transcript Models and Sequences

External Database Gene Card

External database links

1 result

Database	Gene ID
NCBI Reference Sequence	XM_004226383.2

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

citb032a21

Plate: R1CiGC31d14

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

3 results

IPR Term	Analysis	Definition
Sec61-beta/Sbh	PIRSF	Protein transport Sec61-beta/Sbh
Sec61-beta/Sbh	PANTHER	Protein transport Sec61-beta/Sbh
SecG/Sec61-beta/Sbh	Pfam	Protein transport protein SecG/Sec61-beta/Sbh

GOSlim

22 results

GO Term	Annotation Origin	Type
RNA binding	Orthology	molecular function
protein binding	Orthology	molecular function
endoplasmic reticulum	Orthology	cellular component
endoplasmic reticulum membrane	Orthology	cellular component
cytosol	Orthology	cellular component
intracellular protein transport	Orthology	biological process
protein transport	Orthology	biological process
membrane	Orthology	cellular component
integral component of membrane	Orthology	cellular component
regulation of molecular function	Orthology	biological process
enzyme binding	Orthology	molecular function
molecular function regulator	Orthology	molecular function
bounding membrane of organelle	Orthology	cellular component
macromolecular complex	Orthology	cellular component
transmembrane transport	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
cellular response to stress	Orthology	biological process
response to organic substance	Orthology	biological process
proteolysis	Orthology	biological process
cytoplasm	Orthology	cellular component
protein targeting to membrane	Orthology	biological process
protein targeting to ER	Orthology	biological process

GO (Orthology)

20 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
protein import into nucleus, translocation	Hs	biological process
RNA binding	Hs	molecular function
ARF guanyl-nucleotide exchange factor activity	Hs	molecular function
protein binding	Hs	molecular function
endoplasmic reticulum	Hs	cellular component
Sec61 translocon complex	Hs	cellular component
endoplasmic reticulum membrane	Hs	cellular component
cytosol	Hs	cellular component
SRP-dependent cotranslational protein targeting to membrane, translocation	Hs	biological process
intracellular protein transport	Hs	biological process
protein transport	Hs	biological process
P-P-bond-hydrolysis-driven protein transmembrane transporter activity	Hs	molecular function
membrane	Hs	cellular component
integral component of membrane	Hs	cellular component
ubiquitin-dependent ERAD pathway	Hs	biological process
retrograde protein transport, ER to cytosol	Hs	biological process
posttranslational protein targeting to membrane, translocation	Hs	biological process
endoplasmic reticulum Sec complex	Hs	cellular component
epidermal growth factor binding	Hs	molecular function
regulation of molecular function	Hs	biological process

GO (Blast)

12 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	105	2.57e-31
ARF guanyl-nucleotide exchange factor activity	Hs	molecular function	105	2.57e-31
protein binding	Hs	molecular function	105	2.57e-31
endoplasmic reticulum	Hs	cellular component	105	2.57e-31
Sec61 translocon complex	Hs	cellular component	105	2.57e-31
endoplasmic reticulum membrane	Hs	cellular component	105	2.57e-31
cytosol	Hs	cellular component	105	2.57e-31
P-P-bond-hydrolysis-driven protein transmembrane transporter activity	Hs	molecular function	105	2.57e-31
membrane	Hs	cellular component	105	2.57e-31
integral component of membrane	Hs	cellular component	105	2.57e-31
endoplasmic reticulum Sec complex	Hs	cellular component	105	2.57e-31
epidermal growth factor binding	Hs	molecular function	105	2.57e-31

GO (InterProScan)