Gene Card
Best human hits
PUF60; RBM17
Unique Gene ID
Cirobu.g00009870
Gene Model ID
KH2012:KH.C9.335
Location
KhC9:1325789..1332031
External database links
1 result
| Database | Gene ID |
|---|---|
| ENSEMBL | ENSCING00000004543 |
Gateway full ORF
2 results
cima863793
Plate: VES65_L07
cima892442
Plate: VES71_J01
Gene collection 1 (N. Satoh)
3 results
n/a
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The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
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You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.
Click here to see the tree inference method
InterPro
9 results
| IPR Term | Analysis | Definition |
|---|---|---|
| G_patch_dom | Pfam | G-patch domain |
| RBD_domain_sf | SUPERFAMILY | RNA-binding domain superfamily |
| Nucleotide-bd_a/b_plait_sf | Gene3D | Nucleotide-binding alpha-beta plait domain superfamily |
| G_patch_dom | ProSiteProfiles | G-patch domain |
| SPF45_RRM | CDD | SPF45, RNA recognition motif |
| G_patch_dom | SMART | G-patch domain |
| Splicing_factor_SPF45 | PIRSF | Splicing factor, SPF45 |
| RRM_dom_euk | SMART | RNA recognition motif domain, eukaryote |
| RRM_dom | Pfam | RNA recognition motif domain |
GOSlim
16 results
| GO Term | Annotation Origin | Type |
|---|---|---|
| mRNA splicing, via spliceosome | Orthology | biological process |
| nucleic acid binding | Orthology | molecular function |
| DNA binding | Blast | molecular function |
| RNA binding | Orthology | molecular function |
| protein binding | Orthology | molecular function |
| nucleus | Orthology | cellular component |
| nucleoplasm | Orthology | cellular component |
| DNA repair | Orthology | biological process |
| mRNA processing | Orthology | biological process |
| RNA splicing | Orthology | biological process |
| cell junction | Blast | cellular component |
| identical protein binding | Blast | molecular function |
| nuclear part | Orthology | cellular component |
| macromolecular complex | Orthology | cellular component |
| regulation of gene expression | Orthology | biological process |
| cell adhesion molecule binding | Blast | molecular function |
GO (Orthology)
12 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type |
|---|---|---|
| alternative mRNA splicing, via spliceosome | Hs | biological process |
| mRNA splicing, via spliceosome | Hs | biological process |
| nucleic acid binding | Hs | molecular function |
| RNA binding | Hs | molecular function |
| protein binding | Hs | molecular function |
| nucleus | Hs | cellular component |
| nucleoplasm | Hs | cellular component |
| spliceosomal complex | Hs | cellular component |
| DNA repair | Hs | biological process |
| mRNA processing | Hs | biological process |
| RNA splicing | Hs | biological process |
| regulation of RNA splicing | Hs | biological process |
GO (Blast)
12 results
| GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
|---|---|---|---|---|
| nucleic acid binding | Hs | molecular function | 333 | 2.26e-112 |
| DNA binding | Hs | molecular function | 90.9 | 7.34e-20 |
| RNA binding | Hs | molecular function | 333 | 2.26e-112 |
| protein binding | Hs | molecular function | 333 | 2.26e-112 |
| nucleus | Hs | cellular component | 333 | 2.26e-112 |
| nucleoplasm | Hs | cellular component | 333 | 2.26e-112 |
| spliceosomal complex | Hs | cellular component | 333 | 2.26e-112 |
| cyclin-dependent protein kinase activating kinase holoenzyme complex | Hs | cellular component | 90.9 | 7.34e-20 |
| cell junction | Hs | cellular component | 90.9 | 7.34e-20 |
| intracellular ribonucleoprotein complex | Hs | cellular component | 90.9 | 7.34e-20 |
| identical protein binding | Hs | molecular function | 90.9 | 7.34e-20 |
| cadherin binding | Hs | molecular function | 90.9 | 7.34e-20 |
GO (InterProScan)
3 results
| GO Term | Analysis | Type | e-value |
|---|---|---|---|
| nucleic acid binding | SMART | molecular function | 1.2E-19 |
| DNA repair | PIRSF | biological process | 8.4E-98 |
| regulation of RNA splicing | PIRSF | biological process | 8.4E-98 |
