Aniseed - Gene card

Gene Card

Best human hits

AC012314.17; RPS9

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009895

Gene Model ID

KH2012:KH.C9.358

Location

KhC9:955003..957237

Transcript Models and Sequences

KH2012:KH.C9.358.v1.A.nonSL11-1
KH2012:KH.C9.358.v1.A.nonSL12-1
KH2012:KH.C9.358.v1.A.nonSL2-1
KH2012:KH.C9.358.v1.A.nonSL3-1
KH2012:KH.C9.358.v1.A.nonSL6-1
KH2012:KH.C9.358.v1.A.nonSL8-1
KH2012:KH.C9.358.v1.A.nonSL9-1
KH2012:KH.C9.358.v2.A.nonSL10-1
KH2012:KH.C9.358.v2.A.nonSL4-1
KH2012:KH.C9.358.v2.A.nonSL5-1
KH2012:KH.C9.358.v2.A.nonSL7-1
KH2012:KH.C9.358.v2.A.SL1-1

External Database Gene Card

External database links

3 results

Database	Gene ID
ENSEMBL	ENSCING00000021248
NCBI Reference Sequence	XM_002119471.4
NCBI Reference Sequence	XM_004226381.2

Collections

Gateway full ORF

3 results

Gene collection 1 (N. Satoh)

1 result

cilv002e16

Plate: R1CiGC25c09

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

10 results

IPR Term	Analysis	Definition
S4_RNA-bd	Pfam	RNA-binding S4 domain
S4_RNA-bd_sf	Gene3D	RNA-binding S4 domain superfamily
Ribosomal_S4/S9_euk/arc	TIGRFAM	Ribosomal protein S4/S9, eukaryotic/archaeal
Ribosomal_S4/S9	PANTHER	Ribosomal protein S4/S9
S4_RNA-bd	SMART	RNA-binding S4 domain
Ribosomal_S4_CS	ProSitePatterns	Ribosomal protein S4, conserved site
Ribosomal_S4/S9_N	SMART	Ribosomal protein S4/S9, N-terminal
Ribosomal_S4/S9_N	Pfam	Ribosomal protein S4/S9, N-terminal
S4_RNA-bd	ProSiteProfiles	RNA-binding S4 domain
S4_RNA-bd	CDD	RNA-binding S4 domain

GOSlim

21 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
positive regulation of cell proliferation	Orthology	biological process
membrane	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
regulation of gene expression	Orthology	biological process
positive regulation of gene expression	Orthology	biological process

GO (Orthology)

25 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
positive regulation of cell proliferation	Hs	biological process
small ribosomal subunit	Hs	cellular component
membrane	Hs	cellular component
rRNA binding	Hs	molecular function
cytosolic small ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
translation regulator activity	Hs	molecular function
positive regulation of translational fidelity	Hs	biological process
extracellular exosome	Hs	cellular component

GO (Blast)

18 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	330	3.90e-117
structural constituent of ribosome	Hs	molecular function	330	3.90e-117
protein binding	Hs	molecular function	330	3.90e-117
intracellular	Hs	cellular component	330	3.90e-117
nucleus	Hs	cellular component	330	3.90e-117
nucleoplasm	Hs	cellular component	330	3.90e-117
nucleolus	Hs	cellular component	330	3.90e-117
cytoplasm	Hs	cellular component	330	3.90e-117
cytosol	Hs	cellular component	330	3.90e-117
ribosome	Hs	cellular component	330	3.90e-117
focal adhesion	Hs	cellular component	330	3.90e-117
small ribosomal subunit	Hs	cellular component	330	3.90e-117
membrane	Hs	cellular component	330	3.90e-117
rRNA binding	Hs	molecular function	330	3.90e-117
cytosolic small ribosomal subunit	Hs	cellular component	330	3.90e-117
intracellular ribonucleoprotein complex	Hs	cellular component	330	3.90e-117
translation regulator activity	Hs	molecular function	330	3.90e-117
extracellular exosome	Hs	cellular component	330	3.90e-117

GO (InterProScan)

6 results

GO Term	Analysis	Type	e-value
RNA binding	Gene3D	molecular function	6.0E-12
structural constituent of ribosome	TIGRFAM	molecular function	2.8E-71
intracellular	SMART	cellular component	2.5E-19
translation	TIGRFAM	biological process	2.8E-71
small ribosomal subunit	TIGRFAM	cellular component	2.8E-71
rRNA binding	SMART	molecular function	2.5E-19