Gene Card
Best human hits
FUBP1; FUBP3; KHSRP
Unique Gene ID
Cirobu.g00009919
Gene Model ID
KH2012:KH.C9.38
Location
KhC9:5590638..5602037
Transcript Models and Sequences
KH2012:KH.C9.38.v10.A.SL2-3
KH2012:KH.C9.38.v11.A.ND5-1
KH2012:KH.C9.38.v11.A.nonSL10-1
KH2012:KH.C9.38.v11.A.nonSL6-1
KH2012:KH.C9.38.v11.A.nonSL7-1
KH2012:KH.C9.38.v11.A.nonSL8-1
KH2012:KH.C9.38.v11.A.nonSL9-1
KH2012:KH.C9.38.v12.A.SL3-2
KH2012:KH.C9.38.v1.A.SL1-3
KH2012:KH.C9.38.v1.A.SL3-3
KH2012:KH.C9.38.v2.A.SL2-1
KH2012:KH.C9.38.v3.A.ND4-2
KH2012:KH.C9.38.v3.A.nonSL10-2
KH2012:KH.C9.38.v3.A.nonSL6-2
KH2012:KH.C9.38.v3.A.nonSL7-2
KH2012:KH.C9.38.v3.A.nonSL8-2
KH2012:KH.C9.38.v3.A.nonSL9-2
KH2012:KH.C9.38.v4.A.SL2-2
KH2012:KH.C9.38.v5.A.SL1-1
KH2012:KH.C9.38.v5.A.SL3-1
KH2012:KH.C9.38.v6.A.SL1-2
KH2012:KH.C9.38.v6.A.SL3-2
KH2012:KH.C9.38.v7.A.ND4-2
KH2012:KH.C9.38.v7.A.nonSL10-2
KH2012:KH.C9.38.v7.A.nonSL6-2
KH2012:KH.C9.38.v7.A.nonSL7-2
KH2012:KH.C9.38.v7.A.nonSL8-2
KH2012:KH.C9.38.v7.A.nonSL9-2
KH2012:KH.C9.38.v8.A.SL2-2
KH2012:KH.C9.38.v9.A.SL1-2
KH2012:KH.C9.38.v9.A.SL3-2
cien155329
Plate: VES94_P07
cien165739
Plate: VES95_M22
citb3l4
Plate: R1CiGC29c15
citb4j13
Plate: R1CiGC29m19
citb4p9
Plate: R1CiGC29a08
cieg056a23
Plate: R1CiGC24d05
citb016j18
Plate: R1CiGC31a01
cicl047b06
Plate: R1CiGC13k08
n/a
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IPR Term | Analysis | Definition |
---|---|---|
KH_dom_type_1_sf | Gene3D | K Homology domain, type 1 superfamily |
KH_dom | SMART | K Homology domain |
KH_dom_type_1_sf | SUPERFAMILY | K Homology domain, type 1 superfamily |
FUBP_C | Pfam | Far upstream element-binding protein, C-terminal |
KH_dom_type_1 | Pfam | K Homology domain, type 1 |
GO Term | Annotation Origin | Type |
---|---|---|
RNA splicing, via transesterification reactions | Orthology | biological process |
RNA polymerase II core promoter proximal region sequence-specific DNA binding | Orthology | molecular function |
nucleic acid binding | Orthology | molecular function |
DNA binding | Orthology | molecular function |
transcription factor activity, sequence-specific DNA binding | Orthology | molecular function |
RNA binding | Orthology | molecular function |
protein binding | Orthology | molecular function |
nucleus | Orthology | cellular component |
nucleoplasm | Orthology | cellular component |
cytoplasm | Orthology | cellular component |
cytosol | Orthology | cellular component |
transcription, DNA-templated | Orthology | biological process |
regulation of transcription, DNA-templated | Orthology | biological process |
transcription from RNA polymerase II promoter | Orthology | biological process |
mRNA processing | Orthology | biological process |
mRNA catabolic process | Orthology | biological process |
RNA splicing | Orthology | biological process |
positive regulation of gene expression | Orthology | biological process |
membrane | Orthology | cellular component |
positive regulation of transcription, DNA-templated | Orthology | biological process |
positive regulation of transcription from RNA polymerase II promoter | Orthology | biological process |
intracellular part | Orthology | cellular component |
macromolecular complex | Orthology | cellular component |
cytoplasmic part | Orthology | cellular component |
intracellular non-membrane-bounded organelle | Orthology | cellular component |
RNA metabolic process | Orthology | biological process |
organic substance transport | Orthology | biological process |
GO Term | SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae |
Type | Score | E-value |
---|---|---|---|---|
exosome (RNase complex) | Hs | cellular component | 285 | 2.54e-86 |
RNA polymerase II core promoter proximal region sequence-specific DNA binding | Hs | molecular function | 301 | 4.00e-94 |
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | Hs | molecular function | 301 | 4.00e-94 |
nucleic acid binding | Hs | molecular function | 301 | 4.00e-94 |
DNA binding | Hs | molecular function | 301 | 4.00e-94 |
single-stranded DNA binding | Hs | molecular function | 290 | 7.45e-89 |
transcription factor activity, sequence-specific DNA binding | Hs | molecular function | 290 | 7.45e-89 |
RNA binding | Hs | molecular function | 301 | 4.00e-94 |
mRNA binding | Hs | molecular function | 285 | 2.54e-86 |
protein binding | Hs | molecular function | 301 | 4.00e-94 |
nucleus | Hs | cellular component | 301 | 4.00e-94 |
nucleoplasm | Hs | cellular component | 290 | 7.45e-89 |
cytoplasm | Hs | cellular component | 301 | 4.00e-94 |
cytosol | Hs | cellular component | 285 | 2.54e-86 |
cytoplasmic stress granule | Hs | cellular component | 285 | 2.54e-86 |
membrane | Hs | cellular component | 301 | 4.00e-94 |
mRNA 3'-UTR AU-rich region binding | Hs | molecular function | 285 | 2.54e-86 |
GO Term | Analysis | Type | e-value |
---|---|---|---|
nucleic acid binding | SMART | molecular function | 5.1E-16 |
RNA binding | Gene3D | molecular function | 1.9E-26 |
regulation of transcription, DNA-templated | Pfam | biological process | 1.3E-4 |