Aniseed - Gene card

Gene Card

Best human hits

RPL5

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009926

Gene Model ID

KH2012:KH.C9.386

Location

KhC9:4526098..4529487

Transcript Models and Sequences

KH2012:KH.C9.386.v1.A.nonSL10-1
KH2012:KH.C9.386.v1.A.nonSL1-1
KH2012:KH.C9.386.v1.A.nonSL11-1
KH2012:KH.C9.386.v1.A.nonSL12-1
KH2012:KH.C9.386.v1.A.nonSL13-1
KH2012:KH.C9.386.v1.A.nonSL14-1
KH2012:KH.C9.386.v1.A.nonSL15-1
KH2012:KH.C9.386.v1.A.nonSL16-1
KH2012:KH.C9.386.v1.A.nonSL2-1
KH2012:KH.C9.386.v1.A.nonSL4-1
KH2012:KH.C9.386.v1.A.nonSL5-1
KH2012:KH.C9.386.v1.A.nonSL6-1
KH2012:KH.C9.386.v1.A.nonSL7-1
KH2012:KH.C9.386.v1.A.nonSL8-1
KH2012:KH.C9.386.v1.A.nonSL9-1
KH2012:KH.C9.386.v2.A.ND3-1

External Database Gene Card

External database links

2 results

Database	Gene ID
ENSEMBL	ENSCING00000008370
NCBI Reference Sequence	XM_002130120.4

Collections

Gateway full ORF

2 results

Gene collection 1 (N. Satoh)

1 result

cilv039f09

Plate: R1CiGC28o21

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Regulatory Regions

No result

n/a

Gene Phylogeny

You can Right Mouse Click on internal nodes, leaves and outside the tree to see multiple options adapted to your selection.
The 'History' button on the left side permits you to see the changes you have made and eventually to go back.
You can Press 'Shift' Key + Left Mouse Click on the leaf's node to access to a gene card in a new window.
You can Press 'Ctrl' Key + Left Mouse Click on nodes to do a multiple selection.

Click here to see how you can interact with this tree
Click here to see the tree inference method

Gene Annotations

InterPro

5 results

IPR Term	Analysis	Definition
Rbsml_L5_euk/L18_arc	PANTHER	Ribosomal protein L5 eukaryotic/L18 archaeal
Rbsml_L5_euk/L18_arc	Hamap	Ribosomal protein L5 eukaryotic/L18 archaeal
Rbsml_L5_euk/L18_arc	PRINTS	Ribosomal protein L5 eukaryotic/L18 archaeal
Rbsml_L5e/L18P_C	Pfam	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal
Rbsml_L5_euk/L18_arc	Pfam	Ribosomal protein L5 eukaryotic/L18 archaeal

GOSlim

26 results

GO Term	Annotation Origin	Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Orthology	biological process
RNA binding	Orthology	molecular function
structural constituent of ribosome	Orthology	molecular function
protein binding	Orthology	molecular function
intracellular	Orthology	cellular component
nucleus	Orthology	cellular component
nucleoplasm	Orthology	cellular component
nucleolus	Orthology	cellular component
cytoplasm	Orthology	cellular component
endoplasmic reticulum	Orthology	cellular component
cytosol	Orthology	cellular component
ribosome	Orthology	cellular component
focal adhesion	Orthology	cellular component
translational initiation	Orthology	biological process
SRP-dependent cotranslational protein targeting to membrane	Orthology	biological process
positive regulation of gene expression	Orthology	biological process
membrane	Orthology	cellular component
ubiquitin protein ligase binding	Orthology	molecular function
macromolecular complex	Orthology	cellular component
extracellular exosome	Orthology	cellular component
RNA processing	Orthology	biological process
intracellular organelle part	Orthology	cellular component
regulation of catalytic activity	Orthology	biological process
ubiquitin-protein transferase activity	Orthology	molecular function
enzyme regulator activity	Orthology	molecular function
proteolysis	Orthology	biological process

GO (Orthology)

35 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type
ribosomal large subunit assembly	Hs	biological process
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Hs	biological process
RNA binding	Hs	molecular function
mRNA 3'-UTR binding	Hs	molecular function
structural constituent of ribosome	Hs	molecular function
protein binding	Hs	molecular function
intracellular	Hs	cellular component
nucleus	Hs	cellular component
nucleoplasm	Hs	cellular component
nucleolus	Hs	cellular component
cytoplasm	Hs	cellular component
endoplasmic reticulum	Hs	cellular component
cytosol	Hs	cellular component
ribosome	Hs	cellular component
focal adhesion	Hs	cellular component
rRNA processing	Hs	biological process
translation	Hs	biological process
translational initiation	Hs	biological process
SRP-dependent cotranslational protein targeting to membrane	Hs	biological process
5S rRNA binding	Hs	molecular function
positive regulation of gene expression	Hs	biological process
membrane	Hs	cellular component
rRNA binding	Hs	molecular function
cytosolic large ribosomal subunit	Hs	cellular component
intracellular ribonucleoprotein complex	Hs	cellular component
ubiquitin protein ligase binding	Hs	molecular function
macromolecular complex	Hs	cellular component
ribosomal large subunit biogenesis	Hs	biological process
positive regulation of translation	Hs	biological process
mRNA 5'-UTR binding	Hs	molecular function
protein stabilization	Hs	biological process
extracellular exosome	Hs	cellular component
negative regulation of ubiquitin protein ligase activity	Hs	biological process
ubiquitin ligase inhibitor activity	Hs	molecular function
negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process	Hs	biological process

GO (Blast)

23 results

GO Term	SpeciesCe = Caenorhabditis elegans Dr = Danio rerio Dm = Drosophila melanogaster Gg = Gallus gallus Hs = Homo sapiens Mm = Mus musculus Sc = Saccharomyces cerevisiae	Type	Score	E-value
RNA binding	Hs	molecular function	452	5.41e-162
mRNA 3'-UTR binding	Hs	molecular function	452	5.41e-162
structural constituent of ribosome	Hs	molecular function	452	5.41e-162
protein binding	Hs	molecular function	452	5.41e-162
intracellular	Hs	cellular component	452	5.41e-162
nucleus	Hs	cellular component	452	5.41e-162
nucleoplasm	Hs	cellular component	452	5.41e-162
nucleolus	Hs	cellular component	452	5.41e-162
cytoplasm	Hs	cellular component	452	5.41e-162
endoplasmic reticulum	Hs	cellular component	452	5.41e-162
cytosol	Hs	cellular component	452	5.41e-162
ribosome	Hs	cellular component	452	5.41e-162
focal adhesion	Hs	cellular component	452	5.41e-162
5S rRNA binding	Hs	molecular function	452	5.41e-162
membrane	Hs	cellular component	452	5.41e-162
rRNA binding	Hs	molecular function	452	5.41e-162
cytosolic large ribosomal subunit	Hs	cellular component	452	5.41e-162
intracellular ribonucleoprotein complex	Hs	cellular component	452	5.41e-162
ubiquitin protein ligase binding	Hs	molecular function	452	5.41e-162
macromolecular complex	Hs	cellular component	452	5.41e-162
mRNA 5'-UTR binding	Hs	molecular function	452	5.41e-162
extracellular exosome	Hs	cellular component	452	5.41e-162
ubiquitin ligase inhibitor activity	Hs	molecular function	452	5.41e-162

GO (InterProScan)