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Gene Card

Best human hits

RPL35

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009947

Gene Model ID

KH2012:KH.C9.404

Location

KhC9:5128811..5129964

Transcript Models and Sequences

  KH2012:KH.C9.404.v1.A.SL1-1
KH2012:KH.C9.404.v2.A.nonSL10-1
KH2012:KH.C9.404.v2.A.nonSL11-1
KH2012:KH.C9.404.v2.A.nonSL12-1
KH2012:KH.C9.404.v2.A.nonSL3-1
KH2012:KH.C9.404.v2.A.nonSL4-1
KH2012:KH.C9.404.v2.A.nonSL5-1
KH2012:KH.C9.404.v2.A.nonSL6-1
KH2012:KH.C9.404.v2.A.nonSL7-1
KH2012:KH.C9.404.v2.A.nonSL8-1
KH2012:KH.C9.404.v2.A.nonSL9-1
KH2012:KH.C9.404.v2.R.ND2-1

External Database Gene Card

External database links

2 results

Database Gene ID
ENSEMBL ENSCING00000008155
NCBI Reference Sequence XM_002131669.4
Collections

Gateway full ORF

2 results

cima826921

Plate: VES61_P03

cima866668

Plate: VES65_D23

Gene collection 1 (N. Satoh)

2 results

ciad024i24

Plate: R1CiGC03a14

cicl005l21

Plate: R1CiGC08l02

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

4 results

IPR Term Analysis Definition
Ribosomal_L29/L35 Pfam Ribosomal protein L29/L35
Ribosomal_L29/L35_sf SUPERFAMILY Ribosomal protein L29/L35 superfamily
Ribosomal_L29/L35 Hamap Ribosomal protein L29/L35
Ribosomal_L29/L35 TIGRFAM Ribosomal protein L29/L35

GOSlim

12 results

GO Term Annotation Origin Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Orthology biological process
RNA binding Orthology molecular function
structural constituent of ribosome Orthology molecular function
intracellular Orthology cellular component
nucleolus Orthology cellular component
cytosol Orthology cellular component
ribosome Orthology cellular component
translational initiation Orthology biological process
SRP-dependent cotranslational protein targeting to membrane Orthology biological process
membrane Orthology cellular component
RNA processing Orthology biological process
intracellular organelle part Orthology cellular component

GO (Orthology)

16 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay Hs biological process
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) Hs biological process
RNA binding Hs molecular function
mRNA binding Hs molecular function
structural constituent of ribosome Hs molecular function
intracellular Hs cellular component
nucleolus Hs cellular component
cytosol Hs cellular component
ribosome Hs cellular component
rRNA processing Hs biological process
translation Hs biological process
translational initiation Hs biological process
SRP-dependent cotranslational protein targeting to membrane Hs biological process
membrane Hs cellular component
cytosolic large ribosomal subunit Hs cellular component
intracellular ribonucleoprotein complex Hs cellular component

GO (Blast)

10 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
RNA binding Hs molecular function 185 3.35e-62
mRNA binding Hs molecular function 185 3.35e-62
structural constituent of ribosome Hs molecular function 185 3.35e-62
intracellular Hs cellular component 185 3.35e-62
nucleolus Hs cellular component 185 3.35e-62
cytosol Hs cellular component 185 3.35e-62
ribosome Hs cellular component 185 3.35e-62
membrane Hs cellular component 185 3.35e-62
cytosolic large ribosomal subunit Hs cellular component 185 3.35e-62
intracellular ribonucleoprotein complex Hs cellular component 185 3.35e-62

GO (InterProScan)

4 results

GO Term Analysis Type e-value
structural constituent of ribosome Pfam molecular function 2.4E-20
intracellular Pfam cellular component 2.4E-20
ribosome Pfam cellular component 2.4E-20
translation Pfam biological process 2.4E-20

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