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GENE CARD

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Gene Card

Best human hits

SLC6A1; SLC6A5; SLC6A9

Species

C. robusta formely Ciona int. type A

Unique Gene ID

Cirobu.g00009949

Gene Model ID

KH2012:KH.C9.406

Location

KhC9:2033434..2044467

Transcript Models and Sequences

  KH2012:KH.C9.406.v1.A.nonSL2-1
KH2012:KH.C9.406.v1.A.nonSL3-1
KH2012:KH.C9.406.v1.A.nonSL4-1
KH2012:KH.C9.406.v1.R.ND1-1

External Database Gene Card

External database links

4 results

Database Gene ID
ENSEMBL ENSCING00000005474
ENSEMBL ENSCING00000023838
NCBI Reference Sequence XM_009861288.2
NCBI Reference Sequence XR_717380.2
Collections

Gene collection 1 (N. Satoh)

2 results

citb2m6

Plate: R1CiGC28h14

ciad101p09

Plate: R1CiGC37e22

WashU Genome Browser

Click here to view results in the tunicate WashU Browser

Genomicus Synteny Browser

Genomicus browser link

Regulatory Regions

Regulatory Regions

No result

n/a

Gene Phylogeny

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Gene Annotations

InterPro

6 results

IPR Term Analysis Definition
Na/ntran_symport PRINTS Sodium:neurotransmitter symporter
Na/ntran_symport ProSitePatterns Sodium:neurotransmitter symporter
Na/ntran_symport PANTHER Sodium:neurotransmitter symporter
Na/ntran_symport ProSiteProfiles Sodium:neurotransmitter symporter
Na/ntran_symport Pfam Sodium:neurotransmitter symporter
SNS_sf SUPERFAMILY Sodium:neurotransmitter symporter superfamily

GOSlim

15 results

GO Term Annotation Origin Type
plasma membrane Blast cellular component
integral component of plasma membrane Blast cellular component
cell surface Blast cellular component
membrane Blast cellular component
integral component of membrane Blast cellular component
axon Blast cellular component
neuron projection Blast cellular component
synapse Blast cellular component
metal ion binding Blast molecular function
transmembrane transport Blast biological process
organic substance transport Blast biological process
sodium ion transport Blast biological process
cation transport Blast biological process
synapse part Blast cellular component
neuron part Blast cellular component

GO (Orthology)

No result

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type

GO (Blast)

17 results

GO Term SpeciesCe = Caenorhabditis elegans
Dr = Danio rerio
Dm = Drosophila melanogaster
Gg = Gallus gallus
Hs = Homo sapiens
Mm = Mus musculus
Sc = Saccharomyces cerevisiae		 Type Score E-value
transporter activity Hs molecular function 502 7.60e-170
sodium:amino acid symporter activity Hs molecular function 502 7.60e-170
neurotransmitter:sodium symporter activity Hs molecular function 510 6.77e-172
gamma-aminobutyric acid:sodium symporter activity Hs molecular function 509 2.80e-174
plasma membrane Hs cellular component 510 6.77e-172
integral component of plasma membrane Hs cellular component 510 6.77e-172
cell surface Hs cellular component 509 2.80e-174
glycine transmembrane transporter activity Hs molecular function 510 6.77e-172
symporter activity Hs molecular function 510 6.77e-172
glycine:sodium symporter activity Hs molecular function 510 6.77e-172
membrane Hs cellular component 510 6.77e-172
integral component of membrane Hs cellular component 510 6.77e-172
axon Hs cellular component 509 2.80e-174
neuron projection Hs cellular component 509 2.80e-174
synapse Hs cellular component 502 7.60e-170
metal ion binding Hs molecular function 510 6.77e-172
presynapse Hs cellular component 502 7.60e-170

GO (InterProScan)

3 results

GO Term Analysis Type e-value
neurotransmitter:sodium symporter activity PANTHER molecular function 2.4E-232
neurotransmitter transport PANTHER biological process 2.4E-232
integral component of membrane PANTHER cellular component 2.4E-232

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